BAC Information

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BAC

Clone NameMSMg01-369D12
Chromosome6 (Build37)
Map Location 48,425,164 - 48,636,212
singlet/doubletdoublet
Overlap geneSspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4
Upstream geneCul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467
Downstream geneGimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369D12.T7 (MSMg01no369_d12.b1)MSMg01-369D12.TJ (MSMg01no369_d12.g1)
ACCAG476259AG476260
length761768
length of high quality
(start - end)		410 (37 - 446)441 (77 - 517)
definitionCHROMAT_FILE: MSMg01no369_d12.b1 PHD_FILE: MSMg01no369_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:53 2005CHROMAT_FILE: MSMg01no369_d12.g1 PHD_FILE: MSMg01no369_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,635,807 - 48,636,212)(48,425,164 - 48,425,604)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTA
GTTTCTTTTGATTCTCTTTAGAGGATAGTTTGAACTATTAGAATGGTCCA
GAAGTTCCTTCATGGACATCTTTCGCTGAAGTCACTGACCTCCCCTCTGT
TCCCAGGACCCTTGAAGCACTTTTATCTCCTATGCTTTCTCAGAATTTTC
CCTTTCTGGGGGCACTGCTCCAGCCCATCCCCCAGCTGGGGCTGCTCTGC
CTCTACTTCCTGAGATGCTCTCTCCAATGGCTCTCTCCTGCAGCAGTGCC
AACCTGAGACTTCACTTTTGAGATCACTTGCTTTTGCTGTAACTGCACAG
CAGCATTTCCTCATCGAAGACATGATTGTAACACGAAATCATTTTTTAGC
ATATGACTGTCTCCTCTTTGACTCTGTGACAGGAAACTTTCCAGGCACAG
ACACAGTACTGGACAAAGGGCGGTTCTTCTTTTACTTATCATTCTAACTG
ACCTTCTTGTGCCTTTACCTCTCTCTGCTTGTTGGTGTCCTGTGTCATTT
TTTCCATCTTTTCAGTTTATTCTTTTATTTTTTTCCCTCCATCCTCTCTT
TTTTTTTTTTTTTCCCCCTTTTCCCCTTTTCTTTGCTCTATTTCCCCCTT
TTTTTTGTTTTCCCTCCTTTTTTTTACTTCATTCTCCCTTCTCTTATTCC
CCTTCTTTCTTTTCTTTTTTCCCTTTTTTTTTTTTTATCCCCTTTCTCAT
CCTTTTTATTT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGCAGGATCCATAGAAGGCTGTG
CTCTCGGGAAGGGTGAGGCCTGGAGCTGCAGAATAAGGTCCTAATAACAG
AGCCACAGGAGTAATCCCAGCCCTTCATAGCCTCTTGGTTTTTCGGACCC
GACTCAGACTCCCAACCCTTTGGCCAGCCTGTCTCTGTACAACAGACCTA
TAACTGTCTTTCCTTTCAGAGATACCAGGTTGGACACCCTGGACATCCTG
GTCCTCCTGCTCCCAGAGCTGTCTTGTCCCTGGGGGGGACCCTGGCTGGC
GGCAGCGTTCTCGGCTGTGCCCTAGCTCTAGGGACACATTCTGTCCCGGA
GAGGCCACCCAGGAGGAGCCCTGCAGCCCCCCTGTGTGCCTAGGTACAGT
CCTGCCTTCCTGGTGTGGCTGGGAACCTTAGTGGAAAGAGGAACAATAAA
ATGACCCCTTGACCTAGTCCATCCCCCAGTAATGAGGGGAAACTTGCCAA
CCTGGTGGATGTCCTTAAGTCTCCCCATCTTCACCTCCACCCCAAGTTAC
CTTATTAGATGGGCAACTTTTGATTAGACTTTGTTTTGGGTGGTATTCTA
AATCCCCTTTCCTTCCATGTTCCAAGGTTATGGCTTCCATGGCCCTTTTT
TTTTTCCTTGACTCTGTCCCATTTTCTTTCGCCCCCCTTTTTGTTTTTCT
CTGTGCCTTACTTTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_d12.b1 MSMg01no369_d12.b1 CHROMAT_FILE:
MSMg01no369_d12.b1 PHD_FILE: MSMg01no369_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:53 2005
         (410 letters)



>mm_chr6_48635603_48636412
          Length = 810

 Score =  754 bits (390), Expect = 0.0
 Identities = 402/406 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctagtttcttttgattctctttagaggatagtttgaactattagaatggtcca 64
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gaattccctagcagcttttgattctctttagaggatagtttgaactattagaatggtcca 551

                                                                       
Query: 65  gaagttccttcatggacatctttcgctgaagtcactgacctcccctctgttcccaggacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gaagttccttcatggacatctttcgctgaagtcactgacctcccctctgttcccaggacc 491

                                                                       
Query: 125 cttgaagcacttttatctcctatgctttctcagaattttccctttctgggggcactgctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cttgaagcacttttatctcctatgctttctcagaattttccctttctgggggcactgctc 431

                                                                       
Query: 185 cagcccatcccccagctggggctgctctgcctctacttcctgagatgctctctccaatgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cagcccatcccccagctggggctgctctgcctctacttcctgagatgctctctccaatgg 371

                                                                       
Query: 245 ctctctcctgcagcagtgccaacctgagacttcacttttgagatcacttgcttttgctgt 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 370 ctctctcctgcagcagtgccaacctgagactccacttttgagatcacttgcttttgctgt 311

                                                                       
Query: 305 aactgcacagcagcatttcctcatcgaagacatgattgtaacacgaaatcattttttagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aactgcacagcagcatttcctcatcgaagacatgattgtaacacgaaatcattttttagc 251

                                                         
Query: 365 atatgactgtctcctctttgactctgtgacaggaaactttccaggc 410
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 atatgactgtctcctctttgactctgtgacaggaaactttccaggc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no369_d12.g1 MSMg01no369_d12.g1 CHROMAT_FILE:
MSMg01no369_d12.g1 PHD_FILE: MSMg01no369_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:53 2005
         (441 letters)



>mm_chr6_48424964_48425804
          Length = 841

 Score =  822 bits (425), Expect = 0.0
 Identities = 437/441 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcaggatccatagaaggctgtgctctcgggaagggtgaggcctggagctgcagaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcaggatccatagaaggctgtgctctcgggaagggtgaggcctggagctgcagaataa 260

                                                                       
Query: 61  ggtcctaataacagagccacaggagtaatcccagcccttcatagcctcttggtttttcgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcctaataacagagccacaggagtaatcccagcccttcatagcctcttggtttttcgg 320

                                                                       
Query: 121 acccgactcagactcccaaccctttggccagcctgtctctgtacaacagacctataactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccgactcagactcccaaccctttggccagcctgtctctgtacaacagacctataactg 380

                                                                       
Query: 181 tctttcctttcagagataccaggttggacaccctggacatcctggtcctcctgctcccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttcctttcagagataccaggttggacaccctggacatcctggtcctcctgctcccag 440

                                                                       
Query: 241 agctgtcttgtccctgggggggaccctggctggcggcagcgttctcggctgtgccctagc 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctgccttgtccctgggggggaccctggctggcggcagcgttctcggctgtgccctagc 500

                                                                       
Query: 301 tctagggacacattctgtcccggagaggccacccaggaggagccctgcagcccccctgtg 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 tctagggacacattctgtcccggagaggccactcaggaggagccctgcagcccccctgtg 560

                                                                       
Query: 361 tgcctaggtacagtcctgccttcctggtgtggctgggaaccttagtggaaagaggaacaa 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcccaggtacagtcctgccttcctggtgtggctgggaaccttagtggaaagaggaacaa 620

                                
Query: 421 taaaatgaccccttgacctag 441
            ||||||||||||||||||||
Sbjct: 621 caaaatgaccccttgacctag 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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