Query= MSMg01no369_g09.b1 MSMg01no369_g09.b1 CHROMAT_FILE:
MSMg01no369_g09.b1 PHD_FILE: MSMg01no369_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:07 2005
(417 letters)
>mm_chr6_110449836_110450653
Length = 818
Score = 733 bits (379), Expect = 0.0
Identities = 406/415 (97%), Gaps = 1/415 (0%)
Strand = Plus / Minus
Query: 4 ggaattctttt-attcctagcatgacacatacccccacacataaacatacacttgcacat 62
||||||||||| | | |||||||||||||||||||||||||||||||||| || |||||
Sbjct: 618 ggaattcttttaaataatagcatgacacatacccccacacataaacatacaattacacat 559
Query: 63 aatctataaaagtaaacttgtttattagagaagtcaaatctttaaaacactacatatttt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aatctataaaagtaaacttgtttattagagaagtcaaatctttaaaacactacatatttt 499
Query: 123 ctatattattagatcattcctgtgcatgttgtctaaaagattacaaatagtagcgttggg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctatattattagatcattcctgtgcatgttgtctaaaagattacaaatagtagcgttggg 439
Query: 183 aaatggaagtggagctgtttagatgagcacagcttgtagaaataagcactgaaagctttc 242
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaatggaggtggagctgtttagatgagcacagcttgtagaaataagcactgaaagctttc 379
Query: 243 cttggtgtcttcacagatttgcattttggtcttttctcagacctagaaaaactagacact 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cttggtgtcttcacagatttgcattttggtcttttctcagacctagaaaaactagacact 319
Query: 303 ctcctttatgtcagcataggactggtctgccccttcccatgaacaaaaaccataacgatc 362
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 318 ctcctttatgtcagcataggactggtctgtcccttcccatgaacaaaaaccataacgatc 259
Query: 363 cctcagacagttttcaagaacaaatttctttttctcgtccaaatacacatttgta 417
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 258 cctcagacagttttcaagaacaaatttctttttctcgtccaaacacacatttgta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 818
Length adjustment: 9
Effective length of query: 408
Effective length of database: 809
Effective search space: 330072
Effective search space used: 330072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no369_g09.g1 MSMg01no369_g09.g1 CHROMAT_FILE:
MSMg01no369_g09.g1 PHD_FILE: MSMg01no369_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:07 2005
(492 letters)
>mm_chr6_110239327_110240218
Length = 892
Score = 920 bits (476), Expect = 0.0
Identities = 488/492 (99%)
Strand = Plus / Plus
Query: 1 taatgagcaaattttctcccaaaggctccaaattaaacaccatctcctaggagactagga 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatgagcaaattatctcccaaaggctccaaattaaacaccatctcctaggagactagga 260
Query: 61 ttttaatctaacaattttaagaagacagaatgagtcagacaatggcaacaccttttgctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttaatctaacaattttaagaagacagaatgagtcagacaatggcaacaccttttgctt 320
Query: 121 ttgtcacctgtgggcctgctcagctgtgtttctgttgtatgtcagatagagtgtctcatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 ttgtcacctgtgggcctgctcagctgtgtttctgttgtatgtcagatagagggtctcatg 380
Query: 181 gccaaagggaccgcacagtagaacactgtgtttgatagaaagagcagagttcagaaagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccaaagggaccgcacagtagaacactgtgtttgatagaaagagcagagttcagaaagag 440
Query: 241 tctagtctactattgcttatcatgttgtactagaaatgttgctcaacctctctgattttc 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctagcctactattgcttatcatgttgtactagaaatgttgctcaacctctctgattttc 500
Query: 301 tgtataaaaataatatttaattattcatttggtatttttggaaggattagttaaataaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtataaaaataatatttaattattcatttggtatttttggaaggattagttaaataaac 560
Query: 361 agtataactattagctcacaaaatgtctctaacatacttttttaaataagaaaggaaatg 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 agtataactattagctcacaaaatggctctaacatacttttttaaataagaaaggaaatg 620
Query: 421 tatatcttaaaagatactctgaaatttaggaaaacaaacccccttttagtgaggaaaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatatcttaaaagatactctgaaatttaggaaaacaaacccccttttagtgaggaaaatt 680
Query: 481 caatatcacttt 492
||||||||||||
Sbjct: 681 caatatcacttt 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
