BAC Information

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BAC

Clone NameMSMg01-369N24
Chromosome6 (Build37)
Map Location 55,878,063 - 55,878,444
singlet/doubletsinglet
Overlap geneCcdc129
Upstream geneNod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339
Downstream geneGsbs, LOC100041357, Pde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369N24.T7 (MSMg01no369_n24.b1)MSMg01-369N24.TJ (MSMg01no369_n24.g1)
ACCAG476756AG476757
length759760
length of high quality
(start - end)
446 (41 - 486)381 (77 - 457)
definitionCHROMAT_FILE: MSMg01no369_n24.b1 PHD_FILE: MSMg01no369_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:43 2005CHROMAT_FILE: MSMg01no369_n24.g1 PHD_FILE: MSMg01no369_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATCGACTCACGGCTTTTTAGCTGGAAGGCTTTTATTACTTTCCAGTGTCA
CCTTTGCTACAGAACTGCTTAGGTTGTTGATGTCTTCTTGGTTCAACTTT
GATAGCTTAGAGAAATCAGAAAATTGATAAATTCCTTTTAAATTTCCTAA
CTTATTGAAGTACAAGCTTTTAAAATGTCCCTGTATAATATTCTTTCTTT
GATGTCCATTGAAGTGTTTCCCTGTTTAGTTTTGATTTTGTTAAAAGAGT
TTGCTCATCTTCTCAAAGAAGCATTTCTTACATTCCATGATTCTTTGTAT
TATGTGCCTTGTTTCTATTTCATTAACTTCCTCTTTGACTTTTATTATTT
CTTGCCAGTTATTGACTTTGGACATATTTTTATTCTTATGATAAATCATT
AACTCCTTTATTTGTGTTCTCTCTGATTTTTTAATGTAGGCACCTACGGT
CATTAGTTTTGCTTTTAGGGGCAATTTTAATCTGTCCCTGAGATTTTGTG
GTTTCATATTTATTTAACCTATAGAATATTTTACATTCCTCCTTGGACCT
ACCCATTACCCCCCCCATGGACTTGTTAATTCTCCACCAGTTCATACCTT
TTACCAGAAGCTTTGGCCACCCACTGGTTTTTCAGTTTCAATCGCGCAAC
TACGTGCGGTTATAATTAAACTGAAAAATTTTTTCCGCTCTCCTCGTACC
CTGTTCTAC
ACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAAAAAAAATTGTCTCTACTTC
TCTGAAATAACACAATAGACTTATTTTCATCCACTGGATTGGGATCCATG
ACACAAATGCATGACCTTTGGTTGGAAATTATTTCTTAGGAATCTTCTAA
TAATAACTTTCATTTTCCTTCTGGAGATCAACGTCCTTAATATTGGCACT
CTGGAAGTAGTCCTCCAATGTTTGCATGTTTGCTTGGTGATTGTCATGAA
AACAACAGGCCTCCTCTATCATGTACACCTCCTTTGATGCAGGCTGAACA
CAAATTGAAACCATGAACCAAATTAAACCTTTATTCCTGTTAGGTTGATT
CTCATAGGTGTTTTTGTTTGTTTGTTTGTTTGTCTGTTTGCCACGGTGAC
TGCTGATCAACAGATCGATTTCCATTTCCCTGCACTTAATTTCAGCGAAG
CTTTTGTTCTCAATAGGCTTTCCCCCCATAGCATCTTACCTTTTTTCTCT
TTTCATCAAAATTATCCGCTACCGCTCATGCCTATGTATGCACCTGGACT
CCTCTCCTTTTCCTGACCCTTCCCCCTGCCCCACAGCTCCCTCGTTTTTC
CCAACCCCCCTCTTCCCCTATCCCTCCTCCCCAGAACCCCCCCCCCTCCT
GGCTCGCCAGTCCCCCTTTTATACCCTCCCCCCCTTCCCTCCCCCCCCCT
CCCCGCCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_n24.g1 MSMg01no369_n24.g1 CHROMAT_FILE:
MSMg01no369_n24.g1 PHD_FILE: MSMg01no369_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:43 2005
         (381 letters)



>mm_chr6_55877860_55878640
          Length = 781

 Score =  696 bits (360), Expect = 0.0
 Identities = 375/382 (98%), Gaps = 4/382 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   aaaaaaaattgtctctacttctctgaaataacacaatagacttattttcatccactggat 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aaaaaaaattgtctctactgctctgaaataacacaatagacttattttcatccactggat 263

                                                                       
Query: 64  tgggatccatgacacaaatgcatgacctttggttggaaattatttcttaggaatcttcta 123
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 264 tgggatccatgacacaaatgcatgacctttggttgtaaattatttcttaggaatcttcta 323

                                                                       
Query: 124 ataataactttcattttccttctggagatcaacgtccttaatattggcactctggaagta 183
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ataataactttcactttccttctggagatcaacgtccttaatattggcactctggaagta 383

                                                                       
Query: 184 gtcctccaatgtttgcatgtttgcttggtgattgtcatgaaaacaacaggcctcctctat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtcctccaatgtttgcatgtttgcttggtgattgtcatgaaaacaacaggcctcctctat 443

                                                                       
Query: 244 catgtacacctcctttgatgcaggctgaacacaaattgaaaccatgaaccaaattaaacc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catgtacacctcctttgatgcaggctgaacacaaattgaaaccatgaaccaaattaaacc 503

                                                                       
Query: 304 tttattcctgttaggttgattctcataggtgtttttgtttgtttgtttgtttgt----ct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||
Sbjct: 504 tttattcctgttaggttgattctcataggtgtttttgtttgtttgtttgtttgtttgtct 563

                                 
Query: 360 gtttgccacggtgactgctgat 381
           ||||||||||||||||||||||
Sbjct: 564 gtttgccacggtgactgctgat 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)