BAC Information

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BAC

Clone NameMSMg01-369O24
Chromosome6 (Build37)
Map Location 9,350,454 - 9,350,694
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100036521, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369O24.T7 (MSMg01no369_o24.b1)MSMg01-369O24.TJ (MSMg01no369_o24.g1)
ACCAG476803AG476804
length757787
length of high quality
(start - end)
384 (42 - 425)158 (178 - 335)
definitionCHROMAT_FILE: MSMg01no369_o24.b1 PHD_FILE: MSMg01no369_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:49 2005CHROMAT_FILE: MSMg01no369_o24.g1 PHD_FILE: MSMg01no369_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTAGCATTGCGATTATGGTTTTTGATGATAAGTAATGGTCCACAGGATT
AAAGCCCCTGCATTCTGATCTTTAGACGGCAGGTGTGCTGTGGCATTTAA
ATATGCATCCGAACATTGACCTCACACAAACTCCTTACTGATTTGTGAGT
CACATATCAGCTATTTACAATATCATTTATAATAGTATCACAATTACAAT
AATGAAGTAGCAACAAATCATTTTATGGTTTGGGGTCACCACAATATGAG
GAACTGTATTAAAGGGCCACAACATTGCAAAGGTAGAGAGCTACTGACAT
AGTCCTTTAAAAGCACTATTCAAATGGTTTGCTATCCAATATGTAAAAAT
GAGGATGAGAACAGCATTTGGAAGAACACTGAAGCCATTTGGGAATGAAC
AAGGTCATGAAGAATTGAGTACATTTAAGAGGAAAGTTTGGTGCAGGCAG
GCTTACTGTTTTGTACCACGCCTGCTGTTCAATAAGAGAAAGATTGGAAA
TATCTCCCACAATTCTCACTAAAAGCATTCCGCATATGGTTTTCCTCGTT
AATACAACAAGGGCCATTTGCACCCCCCCAAACAACCCTGAAAAAAATCT
CCCAACCGCTTTGGTAAACCACAACAACCCCCGAACTTTAACCACCCCCC
CCCCTTTTGCACACTCGGGGGCCTTCTTGGCAACCTTTTTCTCTTTACCC
CCCCCCC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACATTATCCCCCACTTTCTCTTCTA
TTGGATTCATTCTATCCAGTTTTAAGTTGATATCTTTGATCAACTTGGAC
TAGAGTGTTGTGCAGGGTGGTGAGATGGGGATTTATTTGTATTCTTCTAC
CTGCAGGCATCCAGTTACATCAACACCATTTGGTGAAGATTCTTTCTTTT
TCCCATTGGATGGTTTTGATTTTTTTTGAAAAATCAAGTGTCCAAATGTA
GGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGCGCGCC
CATTTCCTCATGTTTCACCACCTTCCCGGGGGGGGGGGGGGGTCTTTCTA
TACCCTAACCTCTGCCCCCCCCCCCCCCATCGCCTATTCACTACCCCCCG
CCCCGCCGGATGCCCACCCCCCCCCACTCCTTTCCCCTCTTTCCCCCCCC
CCCCCCCCTCCGCCGGCCCCCCCCCCTCCCCCCCCCCATCTCCCCCCCCC
CTCCCCCCCCCCCCCCCCCTTCTCCCCCCCCCCGCCCCCCCTCCCCCCCC
CCCTCGTCTCTCCCCCTCCCGCCCCGTCCCTTTCCCTTCCCCGCTTCCCC
CCCCCCCTCTCCCCTCCCCTCCCCTCTCTCCTTTTTCCCCCCCCCCCCCC
CCCTTCTCCCCCCCCCCTCCCCCCCCCCCCCCCTCTCCCCCCCCTCCCCT
TTCCCCTCCCCCCCCCCTCCCCCTTCTTCCCCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_o24.b1 MSMg01no369_o24.b1 CHROMAT_FILE:
MSMg01no369_o24.b1 PHD_FILE: MSMg01no369_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:49 2005
         (384 letters)



>mm_chr6_9350114_9350897
          Length = 784

 Score =  427 bits (221), Expect = e-124
 Identities = 236/241 (97%)
 Strand = Plus / Plus

                                                                       
Query: 144 ttactgatttgtgagtcacatatcagctatttacaatatcatttataatagtatcacaat 203
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 341 ttactgatttgtgagtcacatatcagctatttacaatatcatttgtaatagtatcacaat 400

                                                                       
Query: 204 tacaataatgaagtagcaacaaatcattttatggtttggggtcaccacaatatgaggaac 263
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgtaataatgaagtagcaacaaatcattttatggtttggggtcaccacaatatgaggaac 460

                                                                       
Query: 264 tgtattaaagggccacaacattgcaaaggtagagagctactgacatagtcctttaaaagc 323
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 461 tgtattaaagggccacaacattgcaaaggtagagacctactgacatagtcctttaaaagc 520

                                                                       
Query: 324 actattcaaatggtttgctatccaatatgtaaaaatgaggatgagaacagcatttggaag 383
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 521 actattcaaatggtttgctatccaatatgtaaaaatgagggtgagaacagcatttggaag 580

            
Query: 384 a 384
           |
Sbjct: 581 a 581



 Score =  174 bits (90), Expect = 7e-48
 Identities = 102/106 (96%), Gaps = 2/106 (1%)
 Strand = Plus / Minus

                                                                       
Query: 41  agtaatggtccacaggattaaagcccctgcattctgatctttagac-ggcaggtgtgctg 99
           ||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct: 345 agtaatggtccacaggattaaagcccctgcactctgatctttag-ctggcaggtgtgctg 287

                                                         
Query: 100 tggcatttaaatatgcatccgaacattgacctcacacaaactcctt 145
           ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tggcacttaaatatgcatccgaacattgacctcacacaaactcctt 241


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)