BAC Information

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BAC

Clone NameMSMg01-370G20
Chromosome6 (Build37)
Map Location 113,055,674 - 113,202,517
singlet/doubletdoublet
Overlap geneSetd5, Lhfpl4, Mtmr14
Upstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078
Downstream geneCpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370G20.T7 (MSMg01no370_g20.b1)MSMg01-370G20.TJ (MSMg01no370_g20.g1)
ACCAG477178AG477179
length784807
length of high quality
(start - end)		496 (35 - 530)350 (67 - 416)
definitionCHROMAT_FILE: MSMg01no370_g20.b1 PHD_FILE: MSMg01no370_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:29 2005CHROMAT_FILE: MSMg01no370_g20.g1 PHD_FILE: MSMg01no370_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,055,674 - 113,056,166)(113,202,170 - 113,202,517)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAATT
TGTGGAAAGGCCCAATCCCTAAAATAGACTCAGTTCTTTGAAGAATTTAA
ATGCCAAATGACAATGAAGGTAGGCCTTCATTATACAATTCTATATATTA
TTCAGTTTAAATTTTTTTAGCCTTTTGTATCCCTTCTCTTTAAGTTGTCC
AAGATTGCCCCCGCTCACAGATTCCCCCCTCTTGTCCTTTTACCTCCCTT
GTACCCAATCTTCCTTGCTTACAGAAAGGAAGTGGAAGCCCCCTACCTTT
CAAGACGAAGTGGCACTACACCAGGATGTGAAAGTCCAGCGAAAGAGACC
CAAGGGGCCTAGGGGGCAGCACACCCCCAGAAGCCAAGTCTATTCCAGGC
AGTACCAGGGATTAGGGTCTGGGCTGGAAAAATCCTGGTGTTTTGAATAT
GTTCAGGTCCAGTTCAGACTCTTGATCCCACAGCCACTTCTTGAGTGAGG
TGGGTGTTGCTCTAATTCCCGTTTCTCTTGGCATTTTCAGACCCTGGGAA
ATCTTTTCCCTTCCGTATAGTAAAACGAACGCTCCAAAATTTTGTGTTGA
AGGCCGCTCCCTGTTATTACTGGTTTCCTTTACAACTGAGGAGTTTATTT
TATTAGTTGGTTCTCTTTTTTCTCCTCCTTACTCTATGTTTACTCTTTTT
TTCTCCCCTTATCCATTCTTCACTGCCTCTCCTCGTTTCTAATTAAATTT
TTTCCCCTCCTCCTCCTTTTTGCATCCCTTTATT

GGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGAGTTCAAACTCAGGTAGCCAGTCTTGTACAGT
GGACACCTTCCTGTACCCAGTGAGCCATTTGCTGGCCTATAAACTTTCAT
AACTCAATTTAAATAGTTTGTTGAAATCCAGTAGTCTGTCAGGGGAATGG
GAAAGGAAACAAGTCAATCTAGTTTGACCGCAGGCTGGGAGATCTATACC
ACTGCACTAAGACAAACGGAAGATGTAAGGTGACAGACCAGTTGAAGTTC
ATTTCTGAGTTGGTCCTGCAATCTGCAGTGTTAAGTGGGTTTCTGGGCTG
GAGAGATGGCTCAGCAGTTAAGAGCACTGTCTGCTCTTCTAGAGGTCCTG
AGTTCAATCCCCAGTAACCACACAGTGACTCACAACCACCTTTAATGAGA
TCTGGTGCCCTCTTTTGTCCTACAGTATACTTGGCCACAGAGCACTCTTT
CCTTAAATATATCTTTTAAAAAAAAAAGTTCTCTAAAAACATAAACTTTC
CCTGGTGTTTTCCTTCTCTCTCCAGGGAACTAATTTTATTTATTTCCCTT
CTCGCTCGTTGGTCGGTTCTTCTCTTTCCTCCTCCCTCTTTCCTTTTTCC
CTCTCTCTTTTTCCCCCCTCTTTTCCTTTCTCTCTTTTCGTATTTTCCCC
TTTTACCTCCCTTCTTCTTCACCTTACTCCTACTTTTCCTCTTTTTTTCT
CTCTTTTTCTCTATTTTTTCTCTTCTACCTTCCCCCTTTTTTTCTCACCC
CTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_g20.b1 MSMg01no370_g20.b1 CHROMAT_FILE:
MSMg01no370_g20.b1 PHD_FILE: MSMg01no370_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:29 2005
         (496 letters)



>mm_chr6_113055471_113056366
          Length = 896

 Score =  953 bits (493), Expect = 0.0
 Identities = 493/493 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagaatttgtggaaaggcccaatccctaaaatagactcagttctttgaagaatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagaatttgtggaaaggcccaatccctaaaatagactcagttctttgaagaatt 263

                                                                       
Query: 64  taaatgccaaatgacaatgaaggtaggccttcattatacaattctatatattattcagtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taaatgccaaatgacaatgaaggtaggccttcattatacaattctatatattattcagtt 323

                                                                       
Query: 124 taaatttttttagccttttgtatcccttctctttaagttgtccaagattgcccccgctca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaatttttttagccttttgtatcccttctctttaagttgtccaagattgcccccgctca 383

                                                                       
Query: 184 cagattcccccctcttgtccttttacctcccttgtacccaatcttccttgcttacagaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagattcccccctcttgtccttttacctcccttgtacccaatcttccttgcttacagaaa 443

                                                                       
Query: 244 ggaagtggaagccccctacctttcaagacgaagtggcactacaccaggatgtgaaagtcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggaagtggaagccccctacctttcaagacgaagtggcactacaccaggatgtgaaagtcc 503

                                                                       
Query: 304 agcgaaagagacccaaggggcctagggggcagcacacccccagaagccaagtctattcca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agcgaaagagacccaaggggcctagggggcagcacacccccagaagccaagtctattcca 563

                                                                       
Query: 364 ggcagtaccagggattagggtctgggctggaaaaatcctggtgttttgaatatgttcagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggcagtaccagggattagggtctgggctggaaaaatcctggtgttttgaatatgttcagg 623

                                                                       
Query: 424 tccagttcagactcttgatcccacagccacttcttgagtgaggtgggtgttgctctaatt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tccagttcagactcttgatcccacagccacttcttgagtgaggtgggtgttgctctaatt 683

                        
Query: 484 cccgtttctcttg 496
           |||||||||||||
Sbjct: 684 cccgtttctcttg 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no370_g20.g1 MSMg01no370_g20.g1 CHROMAT_FILE:
MSMg01no370_g20.g1 PHD_FILE: MSMg01no370_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:29 2005
         (350 letters)



>mm_chr6_113201969_113202718
          Length = 750

 Score =  665 bits (344), Expect = 0.0
 Identities = 347/348 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagttcaaactcaggtagccagtcttgtacagtggacaccttcctgtacccagtgagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tgagttcaaactcaggtagccagtcttgtacagtggacaccttcctgtacccagtgagcc 490

                                                                       
Query: 61  atttgctggcctataaactttcataactcaatttaaatagtttgttgaaatccagtagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atttgctggcctataaactttcataactcaatttaaatagtttgttgaaatccagtagtc 430

                                                                       
Query: 121 tgtcaggggaatgggaaaggaaacaagtcaatctagtttgaccgcaggctgggagatcta 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 429 tgtcaggggaatgggaaaggaaacaagtcaatctagtttgaccacaggctgggagatcta 370

                                                                       
Query: 181 taccactgcactaagacaaacggaagatgtaaggtgacagaccagttgaagttcatttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 taccactgcactaagacaaacggaagatgtaaggtgacagaccagttgaagttcatttct 310

                                                                       
Query: 241 gagttggtcctgcaatctgcagtgttaagtgggtttctgggctggagagatggctcagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gagttggtcctgcaatctgcagtgttaagtgggtttctgggctggagagatggctcagca 250

                                                           
Query: 301 gttaagagcactgtctgctcttctagaggtcctgagttcaatccccag 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gttaagagcactgtctgctcttctagaggtcctgagttcaatccccag 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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