Query= MSMg01no370_o08.b1 MSMg01no370_o08.b1 CHROMAT_FILE:
MSMg01no370_o08.b1 PHD_FILE: MSMg01no370_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:05 2005
(478 letters)
>mm_chr6_22032348_22033226
Length = 879
Score = 623 bits (322), Expect = 0.0
Identities = 346/362 (95%), Gaps = 15/362 (4%)
Strand = Plus / Minus
Query: 131 cctgagcccagatagtcaggcttggaagtgagtacctttactcatggagccatccacctg 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 cctgagcccagatagtcaggcttggaagtgagtacctttactcatggagccatccacctg 820
Query: 191 acctggaaatatggtagccaaggtatgcagtctagtggtagagcatgcaattagcatgta 250
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 819 acctggaaatatggtagccaaggtatgcagcctagtggtagagcatgcaattagcatgta 760
Query: 251 catgaccttgggtaaaatcctcatctatgggggaagaaaaaaagtaagatgttgacaaaa 310
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 759 catgaccttgggtaaaatcctcatctatgggggaag-aaaaaagtaagatgttgacaaaa 701
Query: 311 atccctca-------------gatggttacattttatgattcccataaaacaacaacaac 357
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 700 atccctcaatcttggcttgttgatggttacattttatgattcccataaaacaacaacaac 641
Query: 358 atcccttttgcaattagttatatcttgatatc-aaaaggactcttattttatttgaatat 416
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 640 atcccttttgcaattagttatatcttgatatcaaaaaggactcttattttatttgaatat 581
Query: 417 gggaaaaatgagcagacataaactcctttaatgtatagaaaaatcagctgtgtttcatgg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gggaaaaatgagcagacataaactcctttaatgtatagaaaaatcagctgtgtttcatgg 521
Query: 477 aa 478
||
Sbjct: 520 aa 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 879
Length adjustment: 10
Effective length of query: 468
Effective length of database: 869
Effective search space: 406692
Effective search space used: 406692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_o08.g1 MSMg01no370_o08.g1 CHROMAT_FILE:
MSMg01no370_o08.g1 PHD_FILE: MSMg01no370_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:05 2005
(494 letters)
>mm_chr6_21865693_21866586
Length = 894
Score = 909 bits (470), Expect = 0.0
Identities = 488/494 (98%)
Strand = Plus / Plus
Query: 1 tatgaagaagtttgaagtgaaagaatgtcagtgtatgttgtcacaataggaaagtaacta 60
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tatgaagaagtttgaagtgtaagaatgtcagtgtgtgttgtcacaataggaaagtaacta 260
Query: 61 agacacacctataatcaaaacacactggaagcatgataatcagaattttaaacctactct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacacacctataatcaaaacacactggaagcatgataatcagaattttaaacctactct 320
Query: 121 aggctacatgagcagttcaaggaaatcctgggctatatgagttcctgccccctacacttc 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 aggctacatgagcagttcaaggaaatcctgggctatatgagttcctgtcccctacacttc 380
Query: 181 caaaaataagtggcaactcaaaaacatagctaacatctaacatatcccactattgaatag 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 caaaaataagtggcaactcaaaaacatagctaatatctaacatatcccactattgaatag 440
Query: 241 tattagtaactatcaaatagagttatctattcaatatttaattgaatttttcatattgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattagtaactatcaaatagagttatctattcaatatttaattgaatttttcatattgcc 500
Query: 301 caatcctgaacgtcatctaaaactacttaagttcagtattcctgaaacaatcaaagcaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caatcctgaacgtcatctaaaactacttaagttcagtattcctgaaacaatcaaagcaga 560
Query: 361 ttcaccctctacctgaaagaaagacaggtcaaaatcatagttatcattccctttaaacca 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcaccctctacctgaaagaaagacaggtcaaaatcatagttatcattccctttaaacca 620
Query: 421 gcagagtcaaatgattggagttcaagtaattgagaaatggaccactccttcctgactcct 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagagtcaaatgatcggagttcaagtaattgagaaatggaccactccttcctgactcct 680
Query: 481 tccttgccctgact 494
||||||||||||||
Sbjct: 681 tccttgccctgact 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
