BAC Information

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BAC

Clone NameMSMg01-371A11
Chromosome6 (Build37)
Map Location 45,291,968 - 45,292,587
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371A11.T7 (MSMg01no371_a11.b1)MSMg01-371A11.TJ (MSMg01no371_a11.g1)
ACCAG477635AG477636
length7631,539
length of high quality
(start - end)		620 (74 - 693)---
definitionCHROMAT_FILE: MSMg01no371_a11.b1 PHD_FILE: MSMg01no371_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:16 2005CHROMAT_FILE: MSMg01no371_a11.g1 PHD_FILE: MSMg01no371_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGGTGTTTATAAATCATTATTTTTA
TTACCAGTGCATGCTGTCATGAAAGATGGCTATGAAAGCAACCCATTTAA
ATCATATATCACATATAATCTATATGACCATCTAGTTCCCAGATATACAA
AAGCACAAAAGAGGATTTAAATAATTAAATAGAAAAAAAAGTAAGCTTAA
GATTGTTTCTTAAAATAAGAAAACAGGAATTGCAGTTTTATTTTTATATC
AAGGAAGCCTGTTGACTCTATAGCAATATATAAGCCACTAAAGTAATTTC
AGAAGCTTTTTATCTTAGAAAAGAATGGTAACATAATCTTGGGGCATAAA
TGGGAAGAGAAGGGTTTCAAAATATATTATCATAAATCCTGAACTAGAAG
GGAAACAAGATACTCTCCAATGTGCTAAATTATAATTCCAGTAGAGAAAG
TGTGTGAGCAATGAGAAACCCAGCTACCTAAAGATTTCAGTATTAAATTT
TACTTTACCTTTTCTTTAATTTTTGAGATTATTTTATAATTGCATTATGT
GTTACTTCCATTTCCTCCTCCAAAATTTTCCTTATATCCCTCTTTGCTCT
ATTTCCAACTCAAAGACACTTTTTTCATTGAGTATTTTTATAGACATATG
TGGATATGTGTATCCACACGACATTCTAATATAATCAAGCTTATATATAT
ATATATTACCAGG

TCTATTTCTCTCTTCCTCTCATTTTATATATTGAAANTGATATATATANT
GTTTTACAGCAAATATAGACAGCCTGGTTACTTCTCANNTATTTNAAATA
TTCTACTTCCTCAATAATACATAGCTATTACANCNTGGCTAATATAAGAA
TAGTGAGCATAACATCTACACTACTGTGCAATATCTTATTGATTTTTAGT
CTCTCTATCTACCCTCTACACTTATATAACGCNCATAATCTTCGTCCATA
TGACTATCGATTCTAAATATGTCATTATCAGGTATATCACATCTAATTCA
ACTACATACTCCATACTTCTATATATCTATCTACCTATGTAATCAAGTGT
AGCCACNCTATCTAGCTTGCTCATATGTATATACGTATATTTATTCACTC
TCACAGCTACATACTAGCCACATCTACAATCGATACTATCACNTTGAATC
ATAGGTTGCTTCATGTTCGTCATACTACTAGTGAGTGTCGCATCTTCAAG
TTNCTTACNATTGTTACNCCAGATACTATCTGAGATATGGATATATACTA
GCACTTAGTATCTTATCTTTGTTATAGTCCACACGCGAAAAACATTATTT
TTATATTTNCTTATNACTGATGTCCTTGTATTCCTACAAGCAGCTATGAA
TACTACTACCTTATATATTTATTCTATCATCACTCATATATTCACACACT
CACCNCTAATATATTATATATAATCATGAATACGTCACATCCTCTCCTTA
TTCACACTGATATATATCTTCCTATTTCGCATACTATATACTATAGCTAA
TAGCAGTCCTGTAAACTCTTGTCATCTATATCAACCTCGGCGCTAGATCC
TATTTTCATCTCACGTATTCTATTGTGTTATCCGTCTTCAAACCACACTG
TTATAAATAATACTACAATATATATATGATCATATACTGCCATCCAAATC
TCATCCTACTCCAATTCTCCTCATCAATTGTTATAATGTGCTCTCTCTCC
TCTATATTAAGACACTTTAACTACCACTACGTCTACACATATTACCTCCA
ATGTCGATAGCTCTATATCTGCCTATCACATTTAATACACCTGATCCTAC
ACCCTACTCTACTATATGTTACTCATATAATATACCATATATTGATCACT
ATAATACACAGTTTCNTATCCTCACTAGAAATATATATCTCATCCTCAGC
GATACNCTATAATGTCTATCTCATATCATTAGATATCGTATTGTTCTCTC
ATATATTCTAGAGTAATATATATTNATCTCTGTTTTCTCACATCTCGTAG
TCTTAATATACTATAATATCTCTGTAATATCTATTGTNATCTATCTCTAT
GTCATATACATACTATATATNCCATATTTCANCATGATTGAATACATATA
TATATCTATCATACACTATATATAGTAATCTATCACCTGTATATCACTAT
CTATATATGTGTTACATTACTCCTCGTACACACTNATATATCACTACATA
TATATATCACTTTCCTCTCTCNCATATATAGCNATCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_a11.b1 MSMg01no371_a11.b1 CHROMAT_FILE:
MSMg01no371_a11.b1 PHD_FILE: MSMg01no371_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:16 2005
         (620 letters)



>mm_chr6_45291899_45292918
          Length = 1020

 Score = 1152 bits (596), Expect = 0.0
 Identities = 614/620 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggtgtttataaatcattatttttattaccagtgcatgctgtcatgaaagatggctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agtggtgtttataaatcattatttttattaccagtgcatgctgtcatgaaagatggctat 630

                                                                       
Query: 61  gaaagcaacccatttaaatcatatatcacatataatctatatgaccatctagttcccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gaaagcaacccatttaaatcatatatcacatataatctatatgaccatctagttcccaga 570

                                                                       
Query: 121 tatacaaaagcacaaaagaggatttaaataattaaatagaaaaaaaagtaagcttaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 569 tatacaaaagcacaaaagaggatttaaataattaaatagaaaaaaaagtaaacttaagat 510

                                                                       
Query: 181 tgtttcttaaaataagaaaacaggaattgcagttttatttttatatcaaggaagcctgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgtttcttaaaataagaaaacaggaattgcagttttatttttatatcaaggaagcctgtt 450

                                                                       
Query: 241 gactctatagcaatatataagccactaaagtaatttcagaagctttttatcttagaaaag 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 449 gactctatagcaatatataagccactaaagtaatttcaaaagctttttatcttagaaaag 390

                                                                       
Query: 301 aatggtaacataatcttggggcataaatgggaagagaagggtttcaaaatatattatcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aatggtaacataatcttggggcataaatgggaagagaagggtttcaaaatatattatcat 330

                                                                       
Query: 361 aaatcctgaactagaagggaaacaagatactctccaatgtgctaaattataattccagta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaatcctgaactagaagggaaacaagatactctccaatgtgctaaattataattccagta 270

                                                                       
Query: 421 gagaaagtgtgtgagcaatgagaaacccagctacctaaagatttcagtattaaattttac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gagaaagtgtgtgagcaatgagaaacccagctacctaaagatttcagtattaaattttac 210

                                                                       
Query: 481 tttaccttttctttaatttttgagattattttataattgcattatgtgttacttccattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tttaccttttctttaatttttgagattattttataattgcattatgtgttacttccattt 150

                                                                       
Query: 541 cctcctccaaaattttccttatatccctctttgctctatttccaactcaaagacactttt 600
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 cctcctccaaaatttttcatatatccctctttgctctatttccaactcaaagacactttt 90

                               
Query: 601 ttcattgagtatttttatag 620
           |||| ||| |||||||||||
Sbjct: 89  ttcactgattatttttatag 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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