NNCCCGATGCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
AAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTA
AGAAGGACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGGACTACTCAGCTATTATAAAGAATG
AGATTATGAAATTCCCTAGCCAATGGAGGGGACTGGAGGGGATCATCCTG
AGTGGGGTGACCATTTCCAAAGGAACTCCCCATATGGTCTCCCTGGTAAG
GGGGATTAATCCCCACCCAGGATACCCAGAAATAAAAAACATTTTCTTAA
CCCTGGAATCCTGAAAAATGAAAAGGAAGGGGGGCCTATGCCCCCCTAAA
AGGGTAAAAAAACA

NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTGCTACTTTTATATATTTCTATACAATTTATCAATTAGAAC
AATATCACAAAGCTACAACAGATGTCAATTGTCTTTACACAATAGATACA
ACACCAATAACACTGCAGCTCCTCCAGTGGAATGTGCCTTTCCTCTAAGC
CGCTGCGAAATATGGAATCTGAACTGATCTCTGCCGTATCACAGAGAAAA
TCTGAACACATTTTGCCAAGATGAAAATGAAGTTTTAAAAGATAGCCAAA
TAAAATGACTGGAAATATTCTAATGTTTTGAAATTCAGGAATATATTCAT
AACAAACTCATGGTAAAATCGTACATTAGAGTTTACTTTAATAGATAAAA
AATGAAATGTGGCATATCAAAACGTGTGGCATGCAGATAACTCAGTATTT
GAAGGAGATGTATAATCTGAGTGAGAATATTTGAACAGGAGAACCTCTGA
CAGTGAATGGCATCATTATCTGATGAAATGGAGCAAGTTAGCATAAAGAA
ACTAAAGGCAAACTTGAGGCTGACACATGAGCAGATAATGAGCCCAACAG
CAGAAATGATCACCAAAGTCAAAAGCTGTGTTCACCTTGACCAGAACAAG
TAGGAAAGACACCCATAACCCATACTAACCGGGAAAACGAAAAATAACTC
TTACTATTGTAAACCCCCAGGAAACCTGAAAATTTAAGTTCTTTAAAACT
TTATTATCAAACTGACAAAAAA

Query= MSMg01no371_a21.g1 MSMg01no371_a21.g1 CHROMAT_FILE:
MSMg01no371_a21.g1 PHD_FILE: MSMg01no371_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:19 2005
         (515 letters)



>mm_chr6_56148697_56149611
          Length = 915

 Score =  864 bits (447), Expect = 0.0
 Identities = 490/505 (97%), Gaps = 3/505 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgctacttttatatatttctatacaatttatcaattagaacaatatcacaaa 64
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgctacttttatatctttctatacaatttatcaattagaacaatatcacaaa 264

                                                                       
Query: 65  gctacaacagatgtcaattgtctttacacaatagatacaacaccaataacactgcagctc 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctacaacagatgtgaattgtctttacacaatagatacaacaccaataacactgcagctc 324

                                                                       
Query: 125 ctccagtggaatgtgcctttcctctaagccgctgcgaaatatggaatctgaactgatctc 184
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 ctccagtggaatgtgcctttcctctaagccgctgtgaaatatggaatctgaactgatctc 384

                                                                       
Query: 185 tgccgtatcacagagaaaatctgaacacattttgccaagatgaaaatgaagttttaaaag 244
           ||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 385 tgccgtaccacagagaaaatctgaacacattttgccaagatgcaaaggaagttttaaaag 444

                                                                       
Query: 245 atagccaaataaaatgactggaaatattctaatgttttgaaattcaggaatatattcata 304
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acagccaaataaaatgactggaaatattctaatgttttgaaattcaggaatatattcata 504

                                                                       
Query: 305 acaaactcatggtaaaatcgtacattagagtttactttaatagataaaaaatgaaa-tgt 363
           ||||||||||||||||||| || ||||||||||||||||||||||||||||||||| || 
Sbjct: 505 acaaactcatggtaaaatcatatattagagtttactttaatagataaaaaatgaaaatgc 564

                                                                       
Query: 364 ggcatatcaaaacgtgtggcatgcagataactcagtatttgaaggagatgtataatctga 423
           |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 565 ggcatatcaaaacgtgtggcatgcagataactgagtatttgaaggcgatgtataatctga 624

                                                                       
Query: 424 gtgagaatatttgaacaggagaacctctgacagtgaatggcatcattatctgatgaaatg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgagaatatttgaacaggagaacctctgacagtgaatggcatcattatctgatgaaatg 684

                                    
Query: 484 gagcaagttagcataaag--aaact 506
           ||||||||||||||||||  |||||
Sbjct: 685 gagcaagttagcataaaggcaaact 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)