BAC Information

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BAC

Clone NameMSMg01-371C01
Chromosome6 (Build37)
Map Location 140,218,253 - 140,218,767
singlet/doubletsinglet
Overlap genenone
Upstream geneEG632971, LOC100043898, Pik3c2g, Plcz1, Capza3
Downstream geneLOC100042680, LOC100039020, LOC269810, Plekha5, Aebp2, EG664868, LOC664875, Pde3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371C01.T7 (MSMg01no371_c01.b1)MSMg01-371C01.TJ (MSMg01no371_c01.g1)
ACCAG477711AG477712
length766912
length of high quality
(start - end)		515 (74 - 588)54 (73 - 126)
definitionCHROMAT_FILE: MSMg01no371_c01.b1 PHD_FILE: MSMg01no371_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:25 2005CHROMAT_FILE: MSMg01no371_c01.g1 PHD_FILE: MSMg01no371_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCACCTTCCCTGACGCTGGCCATAGA
CTCTCATGCGACAGGTTCCCTCCCTATACTCAAGGGAAGTATAACTTTAA
TCAGCATAGGCAGAGTGATTGAGCATGCTCAGTATACGCACAGCCTCCCA
CTACTGAGCATGCTCAGTTTCACTTAGTTTGTGTTCCTTACCTCACTGTG
GATAGTCTCTGACTCTCTCCCCACTTCCCCCTCAGGTCATCAGAAAAGGG
GCAGAGCACAGCTCCCCAGTGTCCCACTTAGCACCCTGAGGGCTTCTTTT
AATCTTTTAGTGGCCTTTACTCAGGCCGCAGTGGGACCTGTGGTGTCAGA
TGCTGAAAAGACACGGTGTGAAGATGCAGCCTGGTATACAAAGTGAGTCC
CAGGATAGCCAGGGCCACACAGAGAAACCCTGCCTTGAAAACCCAATATA
ACCCATCCCAACCCAAATCAGCCCAAATCAAAAGGAATAACATGAGGTCT
AGACATATGGCCCAGTGGTTGCTGGTCTTGCAGATGACCCATGTCCGGAT
ATCAACACCACAGTGGTTGGCTCTCACACAACAACTTTAAATTTGTGGCT
CGGAAATCCAAAGCCCTCTTCTGATTTCCGGCTTTTCCCTCACTTAGGTG
CACCTCACTTACTTCCCTTGTTTTTTGACTTAGCTCCCCTTTTGACCTTC
CCAGTTTTTAATTATN

AAATTGCGACGCTAAACGAATCACTATAGGTTACAAAAAAAAGGAATTCT
CTGTGTCTTTAAACAAAACAAATTTGGAGCCCATCCAGAAACAGAAATTC
ATTCTCCCTCTCCCCTCTCCCCTTTCCCCTCACCCCTATAACATCTCACA
ATAAACATATCAAAAGAAGAGAAACAAAAAAAGCAAAATAGAAATAAAAT
ATATAATCAATAAAAAAAAAAAACATAATTTCCCAAAATCCTACAAAAAC
AAGCATTTAATAAAACAAAACAAAAAAAAGAAAAACAAAAAACAAAAATA
AATCCATATACAATACCCATATCAAAAAAATATTTTATTTTTCAACAAAA
AAAAAAATAAAAAACAAAAAAAACAGAAAAAAAAAAAAAAAAAAACAAAA
ATAAAAAAAAAAATAAGAAAAAAAAAGACTAAAACATAACAAAAAATAAA
TAAAAAACAATAAAAACAAAACACAAAATAACAAAAAAAACCAAAATAAA
AAAAAAAAAAAAAAAAAAACAAAAAAATAAATAAACTAAAAAAAATAAAA
ATATTAAAATAACACAAATAAAAAAAATAAAAACAAAAACAAAAAATACA
AAAAACTACAAATATAACATAAAATCAATTAAATAAAAAAAAAAATATAA
CAAAATAACAATATAAAAAAATAACAAAAAATAAAAATAATAATACACAA
ACATAAATAAAAAAAAAAAATAAATACAAATAAAAATAAAAAACACACAA
TATAAACAATAAAAACAACAAACAAATAAAAACATAATAAATAAATAATT
AACATAAAAAAAAAAATAAAAACAAAAAATAATGTCACACAATATCAATC
ATAGTTAAAATTCTAAATAAAAAATATATAAAATATATAAACACAACATC
ATAAAACAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_c01.b1 MSMg01no371_c01.b1 CHROMAT_FILE:
MSMg01no371_c01.b1 PHD_FILE: MSMg01no371_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:25 2005
         (515 letters)



>mm_chr6_140218215_140219129
          Length = 915

 Score =  996 bits (515), Expect = 0.0
 Identities = 515/515 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccaccttccctgacgctggccatagactctcatgcgacaggttccctccctatactcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cccaccttccctgacgctggccatagactctcatgcgacaggttccctccctatactcaa 494

                                                                       
Query: 61  gggaagtataactttaatcagcataggcagagtgattgagcatgctcagtatacgcacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gggaagtataactttaatcagcataggcagagtgattgagcatgctcagtatacgcacag 434

                                                                       
Query: 121 cctcccactactgagcatgctcagtttcacttagtttgtgttccttacctcactgtggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cctcccactactgagcatgctcagtttcacttagtttgtgttccttacctcactgtggat 374

                                                                       
Query: 181 agtctctgactctctccccacttccccctcaggtcatcagaaaaggggcagagcacagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agtctctgactctctccccacttccccctcaggtcatcagaaaaggggcagagcacagct 314

                                                                       
Query: 241 ccccagtgtcccacttagcaccctgagggcttcttttaatcttttagtggcctttactca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ccccagtgtcccacttagcaccctgagggcttcttttaatcttttagtggcctttactca 254

                                                                       
Query: 301 ggccgcagtgggacctgtggtgtcagatgctgaaaagacacggtgtgaagatgcagcctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggccgcagtgggacctgtggtgtcagatgctgaaaagacacggtgtgaagatgcagcctg 194

                                                                       
Query: 361 gtatacaaagtgagtcccaggatagccagggccacacagagaaaccctgccttgaaaacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gtatacaaagtgagtcccaggatagccagggccacacagagaaaccctgccttgaaaacc 134

                                                                       
Query: 421 caatataacccatcccaacccaaatcagcccaaatcaaaaggaataacatgaggtctaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 caatataacccatcccaacccaaatcagcccaaatcaaaaggaataacatgaggtctaga 74

                                              
Query: 481 catatggcccagtggttgctggtcttgcagatgac 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 73  catatggcccagtggttgctggtcttgcagatgac 39


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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