BAC Information

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BAC

Clone NameMSMg01-371F23
Chromosome6 (Build37)
Map Location 76,653,715 - 76,654,123
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668145, EG546907, LOC100042952, LOC668153, EG668155
Downstream geneLOC100042956, Ctnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371F23.T7 (MSMg01no371_f23.b1)MSMg01-371F23.TJ (MSMg01no371_f23.g1)
ACCAG477895AG477896
length794785
length of high quality
(start - end)		410 (79 - 488)438 (49 - 486)
definitionCHROMAT_FILE: MSMg01no371_f23.b1 PHD_FILE: MSMg01no371_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:47 2005CHROMAT_FILE: MSMg01no371_f23.g1 PHD_FILE: MSMg01no371_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATGATGTGAACTTAATGAT
ATGCTTATTTTATTTGGTAAACCTACATCTTTGATTTTTCCCTAGGGACA
TGATGTCATTAAAAACTTTCACTTCCTCACTTAGTCCTCTTTTCCCATCT
AAAAAATATGCTGATGGATAACTTGATTTTTTTATTTGTTTGTTTCTTGA
TAGAAATGTCTACTTAACCAATGCAAGTATTTTAGTAATCAGAACAACAT
GCCATACCCTGTTGTTAGGGAAAAGAGAAACCGTTCATGAGGCTGGAGAG
GTGGTTCAATGGTCATGTGTGCTTCCTGTCTTTTCCAGATGACATGGGTT
TAGGCCTAGTGCCTCAATTAGGCCCCTCAAAATCTCTTTTAACTCCAGCT
CTGGGAGATCTAGTGACCTCTTCTGGNCTCTACAGTCACCTGCACAGAGA
TGGAATATACCCATAAGCACACACACACTCCCACACACGTGGGCACGCTC
TTGTTACCCTTCCCGGGCGAAAATGAAGAAAAAATCCTTGGATAACCCGG
GGGATTGAGGGAGGTCTACCCCCCCTTTGGTAGAGACGGGCCGCGCAAAA
TATTCCCTCCCAAAACAATGTTGTTCGTGGATAAAAAATTTTCCGTTTCT
CTCCTTTCTCCAAAAGGCGGTAACAACCTCCTGAGTTGTGCCTCTTTTCC
ACGCGATATAATATATTCGCCCCTGAATCTTTTTAATGAAAAAA

NNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGGAACCATAGATGCAAGCTTCAGAAACAGAATACAAGAGAT
GGAAGAGAAAATCTCAGGTGCAGAAGATTCCATAGAGAGTATTGACACAA
CAATCAAAGAAAATACAAAATACAAAAGGATCTTAACTCAAAACATCCAG
GAAATCCAGGACACAATGAGAAGATCAAACCTATGGATAATAGGAGTTGA
AGAGAATGAAGATTTTCAACTTAAAGGGCCAGCAAATATCTTCAACAAAA
CAATAGAAGAAAACTTCCCAAACATAAATAAAGAGATGCCCATGATCATA
CAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTC
CCGACACATAAAAATCAGAACAACAAATGCACTAAATAAAATAGAATATT
AAAAGCAGTAAGGGAGAAAAGTCAAGTAACATATAAAAGCAGGCCTATCA
GAATTACAACAGACTTTTCNCCAGAGACTATGAAAGCCAGAAGAGCCTGG
ACAGTTGGTATACAGACACTAATAGAAAACAATGCCAGCCCAGGGTATAT
AACCTGAACTAAATCTCTATTTACATTGAAGGGGGAAACAAAGGATTTCT
TGAAGAAACAAAATTCCACCTTAATCTTTCCCGAAACCCGGCCCTTCCAG
GGATATAACGAAAAAAAAAATACAGGGCGGAAAACCCCCCCTAAAAAAAA
AAAAAAGTAATCCCCCCCCAACCCCAAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_f23.b1 MSMg01no371_f23.b1 CHROMAT_FILE:
MSMg01no371_f23.b1 PHD_FILE: MSMg01no371_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:47 2005
         (410 letters)



>mm_chr6_76653664_76654473
          Length = 810

 Score =  725 bits (375), Expect = 0.0
 Identities = 401/410 (97%), Gaps = 2/410 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   taatgatgtgaacttaatgatatgcttattttatttggtaaacctacatctttgattttt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 taatgatgtgaacttaatgatatgcttattttatttggtaaacctacatctttgattttt 401

                                                                       
Query: 62  ccctagggacatgatgtcattaaaaactttcacttcctcacttagtcctcttttcccatc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ccctagggacatgatgtcattaaaaactttcacttcctcacttagtcctcttttcccatc 341

                                                                       
Query: 122 taaaaaatatgctgatggataacttgatttttttatttgtttgtttcttgatagaaatgt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 taaaaaatatgctgatggataacttgatttttttatttgtttgtttcttgatagaaatgt 281

                                                                       
Query: 182 ctacttaaccaatgcaagtattttagtaatcagaacaacatgccataccctgttgttagg 241
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 280 ctacttaaccaatgcaagtattttagtaatcagaacaacataccgtaccctgttgttagg 221

                                                                       
Query: 242 gaaaagagaaa-ccgttcatgaggctggagaggtggttcaatggtcatgtgtgcttcctg 300
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gaaaaga-aaacccgttcatgaggctggagaggtggttcaatggtcatgtgtgcttcctg 162

                                                                       
Query: 301 tcttttccagatgacatgggtttaggcctagtgcctcaattaggcccctcaaaatctctt 360
           ||||||||||||||||| ||| ||| |||||||||||||||||||||| |||||||||||
Sbjct: 161 tcttttccagatgacataggtatagacctagtgcctcaattaggccccccaaaatctctt 102

                                                             
Query: 361 ttaactccagctctgggagatctagtgacctcttctggnctctacagtca 410
           |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 101 ttaactccagctctgggagatctagtgacctcttctggcctctacagtca 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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