BAC Information

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BAC

Clone NameMSMg01-372M10
Chromosome6 (Build37)
Map Location 19,556,778 - 19,557,212
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372M10.T7 (MSMg01no372_m10.b1)MSMg01-372M10.TJ (MSMg01no372_m10.g1)
ACCAG478961AG478962
length736757
length of high quality
(start - end)
435 (65 - 499)455 (70 - 524)
definitionCHROMAT_FILE: MSMg01no372_m10.b1 PHD_FILE: MSMg01no372_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:36 2005CHROMAT_FILE: MSMg01no372_m10.g1 PHD_FILE: MSMg01no372_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTACTTACCTAAGATTATTCTCCTCTCCCCTCCCTTCATTCCCTTCCCTT
AGCAGTTTATACAGTTTATAGATGTAACTATCTTTCAAAGGTCACTGGCC
CCTTCTCTCCACAGCCTTGTCTCTTTCTTCTCTTCATTCACTGACTTCCT
GTCCTCCTCTTCTTTACTTCTTTTTTTTTAATTTTTGCCTTTAATTTAAT
GACTACAAGCCTAGAAAAATAATAAATTGGGGGAACTTGGATAGTTTTTA
AAAAGTACAACTTATCATCTATGCCATAACTGAGACTAAAGGAAAAGCAC
AAGAAAAAGAGCAAACCAAAATGAGACACCAAAGGCCAACTAGACAGAGT
CACTTCATAAGATTAAAACCAGCGCGGATTTCAACGCCACATCATCTCTT
TTCCTGAAAATCTAATAATTACCAAGGATCTCAGATGAACTTTTAAAGCT
AAACATACCATTTTGGCTGGAAATGCGAATTTCTTACGCTAGTTTTCTTA
ATTACTAATGAGCTTGGGAGCTATGGCTGTGAAAACTCAATGCATTCATT
AAACTGGATTCAAAAAATAATTGCATGTTTAACTTTAACTTTTGACAACT
TTTCAACATTTGAAAAAGTTTCTTGAACTTACCTGATTCTTTAACTGACT
GCATTACAAAAACCTTATACCTTCAATACATAAGTN
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACGATATTGGGGCATGGAACCTTCATAGGA
ACAAGGGACTCTCCTCCCATTGATGACCAACTAGGCCACCTTCTGCTACA
TATGCAGCTAGAGCCATGAGTTCCACGTGTTTTCTTTGGTTAGTGATTTA
GTCCCAGGGAGCTCTGGGGGTACTGGTTAGTTCATATTGCTGTTCCTCCT
TTGGGGTTGCAAAACCTTTCAGCTCCTTGGGTAGTTTCTCTAGCTCCTTC
ATTGGGGACCCTGTTCTCTGTCCAATGGATGTCCACAGAAGTGAGCATCC
ACTTCTGTGTTTGTCAGGCACTGGCAGAGCCTCTCAGGGGTCAGCTATAT
CAGGCTCCTGGCAGCAAGCTCTTGTTGGCTTCCACAATTGTGTCTGGGAT
TGGTGGATGTATATGGGATGGACTCCCAAGTAAGGCAGTCTCTGGATGGT
CATTCCTTCAGTCTCTGCTCCATAGTTTGTCTCTATAACTCCTTCTATGA
GTATTTTGTTCCCCCTTCTAAGAANGGATCTAGTATTTATTCTTTGATCT
TCCTACCCCCTGAGTTTTAAGCGCTTTGGCAATTGGATTCTTGCTATTTC
TGATCTTCTGGGTAAATGACCCCCTTACCTTTAACACCACAACATGCGCG
GTCCTTTGGGAAGGGATTAACTTCCTTGTCATTATACCCTTCTTAATCTC
CCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_m10.b1 MSMg01no372_m10.b1 CHROMAT_FILE:
MSMg01no372_m10.b1 PHD_FILE: MSMg01no372_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:36 2005
         (435 letters)



>mm_chr6_19556578_19557413
          Length = 836

 Score =  826 bits (427), Expect = 0.0
 Identities = 433/435 (99%), Gaps = 1/435 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttattctcctctcccctcccttcattcccttcccttagcagtttatacagtttatagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttattctcctctcccctcccttcattcccttcccttagcagtttatacagtttatagatg 576

                                                                       
Query: 61  taactatctttcaaaggtcactggccccttctctccacagccttgtctctttcttctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 taactatctttcaaaggtcactggccccttctctccacagccttgtctctttcttctctt 516

                                                                       
Query: 121 cattcactgacttcctgtcctcctcttctttacttc-tttttttttaatttttgccttta 179
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 515 cattcactgacttcctgtcctcctcttctttacttcttttttttttaatttttgccttta 456

                                                                       
Query: 180 atttaatgactacaagcctagaaaaataataaattgggggaacttggatagtttttaaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 atttaatgactacaagcctagaaaaataataaattgggggaacttggatagtttttaaaa 396

                                                                       
Query: 240 agtacaacttatcatctatgccataactgagactaaaggaaaagcacaagaaaaagagca 299
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 agtacaacatatcatctatgccataactgagactaaaggaaaagcacaagaaaaagagca 336

                                                                       
Query: 300 aaccaaaatgagacaccaaaggccaactagacagagtcacttcataagattaaaaccagc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aaccaaaatgagacaccaaaggccaactagacagagtcacttcataagattaaaaccagc 276

                                                                       
Query: 360 gcggatttcaacgccacatcatctcttttcctgaaaatctaataattaccaaggatctca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gcggatttcaacgccacatcatctcttttcctgaaaatctaataattaccaaggatctca 216

                          
Query: 420 gatgaacttttaaag 434
           |||||||||||||||
Sbjct: 215 gatgaacttttaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 836
Length adjustment: 9
Effective length of query: 426
Effective length of database: 827
Effective search space:   352302
Effective search space used:   352302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)