BAC Information

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BAC

Clone NameMSMg01-372O04
Chromosome6 (Build37)
Map Location 126,169,235 - 126,330,332
singlet/doubletdoublet
Overlap geneLOC100043565, LOC667427
Upstream geneVamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3
Downstream geneLOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372O04.T7 (MSMg01no372_o04.b1)MSMg01-372O04.TJ (MSMg01no372_o04.g1)
ACCAG479045AG479046
length736743
length of high quality
(start - end)
618 (41 - 658)586 (70 - 655)
definitionCHROMAT_FILE: MSMg01no372_o04.b1 PHD_FILE: MSMg01no372_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:44 2005CHROMAT_FILE: MSMg01no372_o04.g1 PHD_FILE: MSMg01no372_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,169,235 - 126,169,849)(126,329,841 - 126,330,332)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTACTCATATCTCAAGATCTAACTCCCTAATCACCCCTCTAGATCCCTTG
AAGAATAAGGTTCCCTTGTTAGGGTCCCCACTGACCTGATGATCTAGCTG
AGATACACATTCATTCCATTGCTGGGTATTTACTCATTCATTGGTTGTCT
CTCCTCTTGCTCCCGTGCCTGTGCACTTCTGTACCTTCAATCGTAGCCCA
CTCACAAGCTTGCAGAATTACCACTTCAAAAAGACAGCTAGAGTGAGTAT
GGGAAAGGGTAGCTGCGCATAAAATGGATCGAATCATTTCCCATCATACA
TAAGCTTTCCACGACCACTGGCTCATTTAAACACATAGGGGGAAAGCTAT
AGGAAGAGCAGATAAGAGGACCATTATGCTTTCTGCATAGACCCCTAGCT
ATACATGCCTCCCCTGACACATTAATGATTTCGAAAAGGTTCTGAAGGAG
AAGAGGCCAAGGTCATTGCTTAACCACCAGTCTTGTGCTGGTGGGGGGAA
GGGGAATTTATAAAATGTGAGATGTGCAATTAGTTAGATGGCTGCAGAAA
GACCATAAAAATTACTCATTGTCACAGGGAAGGATTTATTCTAGCTTATG
AAAATTGCCTTCCTTCAAAGAAGAGGTTTGCAGGGAGTTGCAGTAATTCT
GCCCTGGTCTCCATGGATAGGAGTGGTCCTCTGGGT
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTTGTTTCCCTCCAAAACTATGTTGTGACT
CTATAATTTTTCGTGATGTTTTGGCTATAATTTTTGTGAAGCCATGATTA
CATTTTGATGATATTGTGGTAATATATTTGATGGTATTACAACTATATTT
TTGATGAATGTTATAGCTATATTTTTGATGATGTTTTGGCTATATTTTGG
GTGATCTTTCTTCTGTTCCTGGTGTCTGCCTTTAAATGGCTGGTTAAGCC
TCCCTCTATACTTTGTCTAGGTGTTCAGACCCTGAGTAGCCAAGCCACCA
ATACTCCATATCTTTTGTTGCCTTCCCTGACTCTCCTCCTTTTCTTTCTT
CCTTTTCCTTCCTTTTCTGTCTCTTCCCTTGTTTCTCCTATCAGCCCAAT
AGGTTTGTCTTGGTGTTTTTAAGGTCAGTCAGGGCACAATCTCTTTCCAC
TCAGATAATTATGTTGGTCTTTAGCCCAAAGTCATAGTGAAGAATAGAGT
TCTAAGGAAGCTAACATTCCTTATTCAAGATTATTAAATGAAGATCAGGA
ACAGAATTCCAAAAATCTGAATTAACCATTACACCCTACATTGTGTCCTT
ATTTGGGAACACTGGGGTTCAAAGTTTATATTAGACAAAGATCTGACTAC
NACATTTAGATGAAATGGCATCACCAGTTCTATGGAAGGCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_o04.b1 MSMg01no372_o04.b1 CHROMAT_FILE:
MSMg01no372_o04.b1 PHD_FILE: MSMg01no372_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:44 2005
         (618 letters)



>mm_chr6_126169032_126170049
          Length = 1018

 Score = 1081 bits (559), Expect = 0.0
 Identities = 601/615 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctactcatatctcaagatctaactccctaatcacccctctagatcccttgaag 63
           |||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctactcagatttcaagatctaacttcctaatcacccctctagatcccttgaag 263

                                                                       
Query: 64  aataaggttcccttgttagggtccccactgacctgatgatctagctgagatacacattca 123
           |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 264 aataaggttcccttgttagggtccccactggcctgatgatctagctgagatatacattca 323

                                                                       
Query: 124 ttccattgctgggtatttactcattcattggttgtctctcctcttgctcccgtgcctgtg 183
           |||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct: 324 ttccattgctgggtatttactcattcattggttgtctctcctctcgctcccatgccagtg 383

                                                                       
Query: 184 cacttctgtaccttcaatcgtagcccactcacaagcttgcagaattaccacttcaaaaag 243
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 384 cacttctgtaccttcaatcgtaacccactcacaagcttgcagaattaccacttccaaaag 443

                                                                       
Query: 244 acagctagagtgagtatgggaaagggtagctgcgcataaaatggatcgaatcatttccca 303
           |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 444 acagctagagtgggtatgggaaagggtagctgcgcataaaatggatggaatcatttccca 503

                                                                       
Query: 304 tcatacataagctttccacgaccactggctcatttaaacacatagggggaaagctatagg 363
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 tcatacataagctttccacgaccactggcacatttaaacacatagggggaaagctatagg 563

                                                                       
Query: 364 aagagcagataagaggaccattatgctttctgcatagacccctagctatacatgcctccc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagagcagataagaggaccattatgctttctgcatagacccctagctatacatgcctccc 623

                                                                       
Query: 424 ctgacacattaatgatttcgaaaaggttctgaaggagaagaggccaaggtcattgcttaa 483
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgacacattaatgattttgaaaaggttctgaaggagaagaggccaaggtcattgcttaa 683

                                                                       
Query: 484 ccaccagtcttgtgctggtggggggaaggggaatttataaaatgtgagatgtgcaattag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccaccagtcttgtgctggtggggggaaggggaatttataaaatgtgagatgtgcaattag 743

                                                                       
Query: 544 ttagatggctgcagaaagaccataaaaattactcattgtcacagggaaggatttattcta 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttagatggctgcagaaagaccataaaaattactcattgtcacagggaaggatttattcta 803

                          
Query: 604 gcttatgaaaattgc 618
           |||||||||||||||
Sbjct: 804 gcttatgaaaattgc 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no372_o04.g1 MSMg01no372_o04.g1 CHROMAT_FILE:
MSMg01no372_o04.g1 PHD_FILE: MSMg01no372_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:44 2005
         (586 letters)



>mm_chr6_126329841_126330826
          Length = 986

 Score =  936 bits (484), Expect = 0.0
 Identities = 490/492 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttgtttccctccaaaactatgttgtgactctataatttttcgtgatgttttggctata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agttgtttccctccaaaactatgttgtgactctataatttttcgtgatgttttggctata 433

                                                                       
Query: 61  atttttgtgaagccatgattacattttgatgatattgtggtaatatatttgatggtatta 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atttttgtgaagccatgatttcattttgatgatattgtggtaatatatttgatggtatta 373

                                                                       
Query: 121 caactatatttttgatgaatgttatagctatatttttgatgatgttttggctatattttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 caactatatttttgatgaatgttatagctatatttttgatgatgttttggctatattttg 313

                                                                       
Query: 181 ggtgatctttcttctgttcctggtgtctgcctttaaatggctggttaagcctccctctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggtgatctttcttctgttcctggtgtctgcctttaaatggctggttaagcctccctctat 253

                                                                       
Query: 241 actttgtctaggtgttcagaccctgagtagccaagccaccaatactccatatcttttgtt 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 actttgtcaaggtgttcagaccctgagtagccaagccaccaatactccatatcttttgtt 193

                                                                       
Query: 301 gccttccctgactctcctccttttctttcttccttttccttccttttctgtctcttccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gccttccctgactctcctccttttctttcttccttttccttccttttctgtctcttccct 133

                                                                       
Query: 361 tgtttctcctatcagcccaataggtttgtcttggtgtttttaaggtcagtcagggcacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tgtttctcctatcagcccaataggtttgtcttggtgtttttaaggtcagtcagggcacaa 73

                                                                       
Query: 421 tctctttccactcagataattatgttggtctttagcccaaagtcatagtgaagaatagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  tctctttccactcagataattatgttggtctttagcccaaagtcatagtgaagaatagag 13

                       
Query: 481 ttctaaggaagc 492
           ||||||||||||
Sbjct: 12  ttctaaggaagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)