BAC Information

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BAC

Clone NameMSMg01-373D03
Chromosome6 (Build37)
Map Location 71,126,634 - 71,127,129
singlet/doubletsinglet
Overlap genenone
Upstream geneIgk, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2
Downstream geneFabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373D03.T7 (MSMg01no373_d03.b1)MSMg01-373D03.TJ (MSMg01no373_d03.g1)
ACCAG479282AG479283
length728733
length of high quality
(start - end)		518 (5 - 522)496 (58 - 553)
definitionCHROMAT_FILE: MSMg01no373_d03.b1 PHD_FILE: MSMg01no373_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:06 2005CHROMAT_FILE: MSMg01no373_d03.g1 PHD_FILE: MSMg01no373_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGATCCGCGGAATTCATTTCATTTGCATTTTTTTTTTTTTTTTTTGGT
TTTTTTCGAGACAGAGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCA
CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCT
CCCGAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCCGGCTCATTTGGA
AAATTTTAACTTTAATTTATTATTTATTGATTTTTTTCTTTTCAAGGAAT
ATTTTTTCAGCAATAGAAACTTGTATGTTATGCCATTTTGCTTGTTCTTT
GTTTTGTTTTGTTTTGTTTTATGTTGCTGTCAATAAGAAATTTGCTTATT
AAAAAAAAATCCAAATGCTGGCATTGTCCAGAAAATTTTAGCAGGTTTAT
TTATAATTGTTACAAAGTTGAACTGTTGAAATGTGTTCACTGAAACATTT
TGCTTGCATTAATGCTTTACATCTTGCATTTATATTAAAAATTCTCACAC
AAACAAACATGGAGAAACTGTTATTATCTGATTCTGTCCCCTCCGGTTCC
ACTTGCAATCATATACTTAAGGACCTTTGACCCCCTTGGAAAAATATATC
TAACCTTTCTTAACTTATTGAAATCTCGGCAAATATTTATTAAGAGAATA
TATAGTGGCCCGACTTTTGTTAGGACACATTTTTTTCTAATTCTTTTTCT
TTTAACACAATTCTGTTTCCTTTTTTCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACCGTGGAGCCCTGTGTGGTACTGGACTTTCGACTCTTCTGCG
TTTATCTCCCAGGTTCTGGTTTATTTTCTTTATCTATTCATCTGTTGAAC
TCAACATTCAGTTTGAGTTTATATGTTTTGAAAAAATAGTGTGTGTATGT
ACATGCACACATGCACGTTTGCTCACTTGCACACAGATATGCGAGCAATG
CTTATAAAGGCAAGAATAGGGTGTTACTGACAGTTGTGAGCCACCAGACA
TGGTTGTTGGAATTAAATTCAGGTCCTCTGGAAGAGACTAGGATGTGCTC
TTAACAGCTGAATCATCTCTCCAGCACCAACTGATTCCCACAGTGGTTTT
AAGAATTTCCATTCCCACTAGCAGGACATAATGGCTTCCTTTCTCTGGAA
CCCTTACTAACATCTGCTTAGTTTTCTTTTGCCCTATTCTTCCTGGGACA
AGGTTGCAATATAGTTTGAATTTGTATTTTCCAGATGTTGAACATGAATC
TTCTCTATTAAAATTTTGAAAAGTTCTTCTATGAGTTGTTTGTTCTTTTA
TTTTCTTTTTTAGCAGTTTTTATAATTTGTATACTTATTCTTTGAATTTT
TTTGTTCTTTTTTTAGTTTTTTTACGCATTTTTTTTTATATTTTTAACAT
AAATGCTTTTCCCCCCTATAATTTTTTGTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_d03.g1 MSMg01no373_d03.g1 CHROMAT_FILE:
MSMg01no373_d03.g1 PHD_FILE: MSMg01no373_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:06 2005
         (496 letters)



>mm_chr6_71126434_71127329
          Length = 896

 Score =  890 bits (460), Expect = 0.0
 Identities = 487/496 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accgtggagccctgtgtggtactggactttcgactcttctgcgtttatctcccaggttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accgtggagccctgtgtggtactggactttcgactcttctgcgtttatctcccaggttct 260

                                                                       
Query: 61  ggtttattttctttatctattcatctgttgaactcaacattcagtttgagtttatatgtt 120
           ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtttattttctttatccattcgtctgttgaactcaacattcagtttgagtttatatgtt 320

                                                                       
Query: 121 ttgaaaaaatagtgtgtgtatgtacatgcacacatgcacgtttgctcacttgcacacaga 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaaaaaatggtgtgtgtatgtacatgcacacatgcacgtttgctcacttgcacacaga 380

                                                                       
Query: 181 tatgcgagcaatgcttataaaggcaagaatagggtgttactgacagttgtgagccaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 tatgcgagcaatgcttataaaggcaagaatagggtgttactgacaattgtgagccaccag 440

                                                                       
Query: 241 acatggttgttggaattaaattcaggtcctctggaagagactaggatgtgctcttaacag 300
           ||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaagggtgctggaattaaattcaggtcctctggaagagactaggatgtgctcttaacag 500

                                                                       
Query: 301 ctgaatcatctctccagcaccaactgattcccacagtggttttaagaatttccattccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgaatcatctctccagcaccaactgattcccacagtggttttaagaatttccattccca 560

                                                                       
Query: 361 ctagcaggacataatggcttcctttctctggaacccttactaacatctgcttagttttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctagcaggacataatggcttcctttctctggaacccttactaacatctgcttagttttct 620

                                                                       
Query: 421 tttgccctattcttcctgggacaaggttgcaatatagtttgaatttgtattttccagatg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 tttgccctattcttcctgggacaaggttgcaatatagtttgaatttgtattttctagatg 680

                           
Query: 481 ttgaacatgaatcttc 496
           |||||| |||||||||
Sbjct: 681 ttgaacttgaatcttc 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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