Query= MSMg01no373_i17.b1 MSMg01no373_i17.b1 CHROMAT_FILE:
MSMg01no373_i17.b1 PHD_FILE: MSMg01no373_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:31 2005
(593 letters)
>mm_chr6_33994411_33995403
Length = 993
Score = 1131 bits (585), Expect = 0.0
Identities = 591/593 (99%)
Strand = Plus / Plus
Query: 1 tagctgactctggaccctaaagacttgacagggctctggaactcttcagtgacagtggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagctgactctggaccctaaagacttgacagggctctggaactcttcagtgacagtggcc 260
Query: 61 agctgtttccattctctggctcttccagccttccagtctctgtcggcttcagcctctgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgtttccattctctggctcttccagccttccagtctctgtcggcttcagcctctgtt 320
Query: 121 ccctgtctcccctagtttctttggtcaccctattcctgctctgaccattctctcagccgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctgtctcccctagtttctttggtcaccctattcctgctctgaccattctctcagccgg 380
Query: 181 ccatgctgcctcttcttcagtgatcaagcagcctgatgcccacatgactgccaccttttg 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatgctgcctcttcttcagcgatcaagcagcctgatgcccacatgactgccaccttttg 440
Query: 241 tcacttggctcgttagctgtacagcaattgctgccattgctttgatgcttcttctaatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcacttggctcgttagctgtacagcaattgctgccattgctttgatgcttcttctaatat 500
Query: 301 tgctgctccctgtctctgttgctgcgttcttcacgtccctggctcacccccagcaaagcc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 tgctgctccctgtctctgttgctgcgttcttcacgtccctggctcacccccagcaaagac 560
Query: 361 tttgttgggcctgtcgctgtatgtaaccagtggagccagcacaggagccagcttgctcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgttgggcctgtcgctgtatgtaaccagtggagccagcacaggagccagcttgctcct 620
Query: 421 ggaacctgaacaactggctcttagagccagagaaggagtgttggaccaatcacagctcac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaacctgaacaactggctcttagagccagagaaggagtgttggaccaatcacagctcac 680
Query: 481 cttgcatgcaaatgaagggttgtgtttgcaccagtgaacagccttcctacttccccacca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttgcatgcaaatgaagggttgtgtttgcaccagtgaacagccttcctacttccccacca 740
Query: 541 gttagagcagtctcccagctaggccatcagggaagtgagcctcctctaaccta 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttagagcagtctcccagctaggccatcagggaagtgagcctcctctaaccta 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_i17.g1 MSMg01no373_i17.g1 CHROMAT_FILE:
MSMg01no373_i17.g1 PHD_FILE: MSMg01no373_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:31 2005
(545 letters)
>mm_chr6_34169478_34170423
Length = 946
Score = 971 bits (502), Expect = 0.0
Identities = 535/548 (97%), Gaps = 5/548 (0%)
Strand = Plus / Minus
Query: 1 tctgcgtagttaaacagaacaatctctctcctctttaaggccgtgtttacccttcagaaa 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 746 tctgcgtagttaaacagaacaatctctctcctctttaaggccatgtttacccttcagaaa 687
Query: 61 tcgcaggccccggaagcctggagcgtggaccatatcatcttcaggagtgatgtgccgcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcgcaggccccggaagcctggagcgtggaccatatcatcttcaggagtgatgtgccgcat 627
Query: 121 tagccagactctgtccttcaaaagaagcagcaggagatccattattgtcctgggcagctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tagccagactctgtccttcaaaagaagcagcaggagatccattattgtcctgggcagctt 567
Query: 181 ctgtcagagctctgtggctccagggaaagaaaatgggcgccagggctcctgtctagcgct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctgtcagagctctgtggctccagggaaagaaaatgggcgccagggctcctgtctagcgc- 508
Query: 241 tt---gtatttgacaggcgtgttgggtggccgacacctgggccttcctttaactcatagc 297
| | | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 -tgcagcaattgacaggcgtgttgggtggccgacacctgggccttcctttaactcatagc 449
Query: 298 caggtttcaacatgaagacaacttccaaagtctgtgacagagagtggggaactgaatggg 357
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 448 caggtttcagcatgaagacaacttccaaagtctgtgacagaaagtggggaactgaatggg 389
Query: 358 acgaggcgagtagggacgtggcagcccccagaggtttgacactgtgtctatcaacagcga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acgaggcgagtagggacgtggcagcccccagaggtttgacactgtgtctatcaacagcga 329
Query: 418 gcacttatgcaggaggcacatcctctgttcagaccacgggaggtatctgcttcccatttc 477
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 328 gcacttatgcaggaggcacatcctctgttcagaccacgggaggcagctgcttcccatttc 269
Query: 478 tgtctccatctccagtcaacccatgttgcattcaaactgtgggaacgtacttggtctagc 537
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 268 tgtctccatctccagtcaacccatgttgcattcaaactgtgagaacgtacttggtctagc 209
Query: 538 ccaagcta 545
||||||||
Sbjct: 208 ccaagcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 946
Length adjustment: 10
Effective length of query: 535
Effective length of database: 936
Effective search space: 500760
Effective search space used: 500760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
