BAC Information

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BAC

Clone NameMSMg01-373M01
Chromosome6 (Build37)
Map Location 84,064,617 - 84,259,929
singlet/doubletdoublet
Overlap geneDysf
Upstream geneGcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, LOC665114
Downstream gene4930504D19Rik, Cyp26b1, Exoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373M01.T7 (MSMg01no373_m01.b1)MSMg01-373M01.TJ (MSMg01no373_m01.g1)
ACCAG479708AG479709
length746826
length of high quality
(start - end)		435 (60 - 494)244 (141 - 384)
definitionCHROMAT_FILE: MSMg01no373_m01.b1 PHD_FILE: MSMg01no373_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:46 2005CHROMAT_FILE: MSMg01no373_m01.g1 PHD_FILE: MSMg01no373_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,064,617 - 84,065,051)(84,259,686 - 84,259,929)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTGA
CATTGCCACCCAGATCAATTTAGCATACTGAAAATATAGGCCACACTCTG
CACACAGGTCCCAACCCCCCACCACAACGCAGACCACACACTCAAAACAT
GTATGTCAGACCAGGCTCCACAGATCACACCTGGTACTCACGGATGCCCA
CAAATACATAGAGTAGATATGAGTCAGGTGGACTTTCCTGGTAGCATTCA
CTTACAGTCCCAGGATGCTCCAGGATGTCAGAGAAGTGCCTTGTTTTTGG
CTTCCTAGAGGAATACTCCATAACATGGAGGCTATGCTGTGGCAGGCAAG
GCTTGGCTTGGCAGGGCCCTTGAACCCCGCAGATAGGAGGTTCAAGGCAG
GGGATGGGGTGTACACTCTCTGAGTTGTCTGCCATTGGCTACTGCCTAGC
AGGACGTCCTGTGACACACATGTCTTCACAGGGAGGTGGTTTACTAGTGG
TGGGCTGTGTCCTGAGCCCACACTTCTGGCTGCCGGTGATAGGCCACAGC
GTGAATGTGTCCGCTTGTGAAGGCCCAAATGATAGTCCTCTCTGATTACC
CGGAACATGCCGTGTAAATCATTACATGTCCACTGTACTCTCCTTGTGAT
CTCCTCATGACTCCCCTATTGCTTGTTCCCATAATTCTGGCCTATGTTTA
TTTTTTTTTTCCCTGCCTCACCAATTTGCTCTTCCTTTTGCTCCTT

GATTAGTTTAGGTAGAGGGNAAGCAGCCTTAGGCAGAGGTAGTTGAGAGA
GTGNGTNNTGNNGNNGGNNNNCCGATGATAXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGCGAAATTCAACTAT
GAAGACAAGGTGCTCTTCACCTCATTTTTAATCTGCGGAAGCCACTGTCC
AGCACAGTCACTGCGTTTGCAGCTCTCGCAGATCTTGCTATTTGCCAATC
TTCAGCTTGGCTAAGAGCTGAGTGCCTCTTCTGGCTTAGATCTGTGGTGT
GGAGGTATTTGTTTCCCAAGCTACTCTGTACCCTCAGATCTAAGTGAGCA
AATCTGGGGCCAGATGGGCAAACACTTCCCCTAGACTATGTTTTCCAGAC
TTCTGCCCTACCTCTTCTTTCTGCTTCTTCCTCGGCTGTGCCAGGGCTAA
GTTAAATTGAGACTTTTGTTATTATCTAGAGGAAGAGGTACAAGCAAACA
GGCATGGTGCTACACACCTCTGGACTATGGAGGATAGTGATACCCCAATC
TTCAGCGATTCAGCATTTCCTCTACCTATTTTATCAGGCATAGAAGACTC
TCCATCAGCCCTTAAAACTNTGACCTTACCGCAGATTCTCAGCCCACTAC
CGAATTGCCATAAGATTGGCCCTTTGGCTTGATCGTTCAATTTTGTTACA
TTCCTTTCTCTCCTAATCTTCTATCTTTTTTAAATTCTTTTTTATGTATT
TCCAAACTTTTCTAACATCTTTTTGGATATACTTTTGTTTCATTCTTCAC
TCTTATTTTACAACTATGATTGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_m01.b1 MSMg01no373_m01.b1 CHROMAT_FILE:
MSMg01no373_m01.b1 PHD_FILE: MSMg01no373_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:46 2005
         (435 letters)



>mm_chr6_84064417_84065251
          Length = 835

 Score =  818 bits (423), Expect = 0.0
 Identities = 432/435 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagatcaatttagcatactgaaaatataggccacactctgcacacaggtcccaaccccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagatcaatttagcatactgaaaatataggccacactctgcacacaggtcccaaccccc 260

                                                                       
Query: 61  caccacaacgcagaccacacactcaaaacatgtatgtcagaccaggctccacagatcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccacaacgcagaccacacactcaaaacatgtatgtcagaccaggctccacagatcaca 320

                                                                       
Query: 121 cctggtactcacggatgcccacaaatacatagagtagatatgagtcaggtggactttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 cctggtactcacggatgcccacaaatacatagagtagatatgagtcaggtggacttttct 380

                                                                       
Query: 181 ggtagcattcacttacagtcccaggatgctccaggatgtcagagaagtgccttgtttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtagcattcacttacagtcccaggatgctccaggatgtcagagaagtgccttgtttttg 440

                                                                       
Query: 241 gcttcctagaggaatactccataacatggaggctatgctgtggcaggcaaggcttggctt 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttcctagaggaagactccataacatggaggctatgctgtggcaggcaaggcttggctt 500

                                                                       
Query: 301 ggcagggcccttgaaccccgcagataggaggttcaaggcaggggatggggtgtacactct 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcagggcccttgaaccccacagataggaggttcaaggcaggggatggggtgtacactct 560

                                                                       
Query: 361 ctgagttgtctgccattggctactgcctagcaggacgtcctgtgacacacatgtcttcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgagttgtctgccattggctactgcctagcaggacgtcctgtgacacacatgtcttcac 620

                          
Query: 421 agggaggtggtttac 435
           |||||||||||||||
Sbjct: 621 agggaggtggtttac 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no373_m01.g1 MSMg01no373_m01.g1 CHROMAT_FILE:
MSMg01no373_m01.g1 PHD_FILE: MSMg01no373_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:46 2005
         (244 letters)



>mm_chr6_84259486_84260129
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcaactatgaagacaaggtgctcttcacctcatttttaatctgcggaagccactgtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attcaactatgaagacaaggtgctcttcacctcatttttaatctgcggaagccactgtcc 385

                                                                       
Query: 61  agcacagtcactgcgtttgcagctctcgcagatcttgctatttgccaatcttcagcttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agcacagtcactgcgtttgcagctctcgcagatcttgctatttgccaatcttcagcttgg 325

                                                                       
Query: 121 ctaagagctgagtgcctcttctggcttagatctgtggtgtggaggtatttgtttcccaag 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctaagagctgagcgcctcttctggcttagatctgtggtgtggaggtatttgtttcccaag 265

                                                                       
Query: 181 ctactctgtaccctcagatctaagtgagcaaatctggggccagatgggcaaacacttccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctactctgtaccctcagatctaagtgagcaaatctggggccagatgggcaaacacttccc 205

               
Query: 241 ctag 244
           ||||
Sbjct: 204 ctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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