BAC Information

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BAC

Clone NameMSMg01-373N13
Chromosome6 (Build37)
Map Location 141,889,386 - 141,889,751
singlet/doubletsinglet
Overlap geneSlco1a1
Upstream geneLOC664875, Pde3a, Slco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913
Downstream geneEG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373N13.T7 (MSMg01no373_n13.b1)MSMg01-373N13.TJ (MSMg01no373_n13.g1)
ACCAG479780AG479781
length738732
length of high quality
(start - end)
---366 (170 - 535)
definitionCHROMAT_FILE: MSMg01no373_n13.b1 PHD_FILE: MSMg01no373_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:53 2005CHROMAT_FILE: MSMg01no373_n13.g1 PHD_FILE: MSMg01no373_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTCCAGAGATCCGCGGAATTCCCTCTTTTCCCCTCTACCTTCGTCATG
ACATGTGCCTTTATTTCCAACTCTAACTTTTCAAGTGTGGCCAATTGTCC
GGGATTGGGCGAAGTGGACGTACTGGGTTCTGATGATGACCGAGTGGACC
AGACTATCTGATAAAAGCACCCTGACGTATGCCTATTATCATCTCGTGAT
CTCTGGAGCTGGCCGGTATCGTATGTATTAGGACTCAGAGTGNACCTCAG
ATGAGATATCTCCCCTCTATCGACAGGCAAGTAAAACAAATTTTCTTCTC
TGATAACTGCCCAGCTCAACGGCTTTAGGGCTTATTATCTCCACATCGGC
TTTGTGTCTTTTATTTGCTGACTATATGTACTGCCGCCCGACAAAGCTCC
AATTACTATTTACTGCTCCTTACCATAGCTTATAAATGCTCTGAACTTAA
AACTCTCTTCCTCTTATTAGTCCACTTTAACTTCCACTCCACTTGTCTCC
AGATTGTTCTAGATCACAATGATTGATTTTAGGCACAGATGACGGATGCA
TGCATGAATCCTATGAAAAATTCTCCCCCTTTTCTTTGCTATTGGTTCCC
CGTAATCTCCCCTATTATCCTTGTATCCTCTTCTATTCCTTTCCTTTTTT
TTTCCCCGTTTCTTTTACCTACACTTTTCTCTTTTCTTTTCTCTTTCAAA
CTCGCTTTTTCTCTCCCTTTTTCTCTCTCCCTAATTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTCCTCTTGTTGACTAAGGAGAGTTTTTCCTGTCAGACATT
AAAGATTTCGAACAGTTGTCTCTGCATGCTGATGATGATGGACATAGGTT
ATACGCAGCTCAGGAGAGAGTTCAAACACTGAGTATCTTGGGACATTACC
TGATAGATGATGATTTCATTGATGGGGTCTTTGGAAACAGACAGGCTGTA
ATAAGGAAAATAAAAATATATAAGTGGGGAAACAAGCCATTCAAAAACAA
CACCACATCTCTTCTTCTTAGATAGCAGACTAGAGAGAAATAAAATTGAG
AGAAAAACAGTCTTCAAATATCTTTCAAACAGTTCAGACCACTTAAAGAT
TTTCTAAGTCATCAAAGAAGAGTGTTTGATTTTTCTGATATTTCCCTTAT
GTATAATAGGAACAAGGTAAATGTTCTCACCAAACTGAAGGATGTGGTTT
GCAGAGAAATTACTTATGTATTTGGTTCTTTTCAACTCCTTTTCTGTGTG
ACAAATACTTATGCACCTTAAGGAAACTTTTGTCTACTTGATCCCGCTTT
TATTTAGACTTTCTTTTTCCTTTTTATACGAAGCTTTACCAAGCTTTCCT
CTTTGTTTTTGGACCTTTTTTGTACCCACTCCTACTTTCCCTTTTCTTTT
TTCCTTTTCTGGTCCCCTCTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_n13.g1 MSMg01no373_n13.g1 CHROMAT_FILE:
MSMg01no373_n13.g1 PHD_FILE: MSMg01no373_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:53 2005
         (366 letters)



>mm_chr6_141889186_141889951
          Length = 766

 Score =  692 bits (358), Expect = 0.0
 Identities = 364/366 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttcaaacactgagtatcttgggacattacctgatagatgatgatttcattgatggggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gttcaaacactgagtatcttgggacattacctgatagatgatgatttcattgatggggtc 507

                                                                       
Query: 61  tttggaaacagacaggctgtaataaggaaaataaaaatatataagtggggaaacaagcca 120
           ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 506 tttggaaacagacaggctgtaataaggaaaataaaaatatagaagtggagaaacaagcca 447

                                                                       
Query: 121 ttcaaaaacaacaccacatctcttcttcttagatagcagactagagagaaataaaattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttcaaaaacaacaccacatctcttcttcttagatagcagactagagagaaataaaattga 387

                                                                       
Query: 181 gagaaaaacagtcttcaaatatctttcaaacagttcagaccacttaaagattttctaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gagaaaaacagtcttcaaatatctttcaaacagttcagaccacttaaagattttctaagt 327

                                                                       
Query: 241 catcaaagaagagtgtttgatttttctgatatttcccttatgtataataggaacaaggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 catcaaagaagagtgtttgatttttctgatatttcccttatgtataataggaacaaggta 267

                                                                       
Query: 301 aatgttctcaccaaactgaaggatgtggtttgcagagaaattacttatgtatttggttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatgttctcaccaaactgaaggatgtggtttgcagagaaattacttatgtatttggttct 207

                 
Query: 361 tttcaa 366
           ||||||
Sbjct: 206 tttcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)