Query= MSMg01no374_b08.b1 MSMg01no374_b08.b1 CHROMAT_FILE:
MSMg01no374_b08.b1 PHD_FILE: MSMg01no374_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:12 2005
(506 letters)
>mm_chr6_98704964_98705871
Length = 908
Score = 884 bits (457), Expect = 0.0
Identities = 490/501 (97%), Gaps = 2/501 (0%)
Strand = Plus / Plus
Query: 8 gaattcactatatagactaggctgagtaagaacccccagcgatcttccttcccttgtctc 67
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcactatatagactaggctgagcaagaacccccagcgatcttccttcccttgtctc 267
Query: 68 ccaatggctaggattaatggcttatacccccataccaggcaagaatgaattcttgtttat 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ccaatggctaggattaatggcttatacccccataccaggcaagaatgaattcttgtttat 327
Query: 128 atgtttagattctgtacttaaaaggctatggttaaggtgagttaaa-ttttttaatcata 186
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 328 atgtttagattctgtacttaaaaagctatggttaaggtgagttaaatttttttaatcata 387
Query: 187 agaaaagttagaaaatattcacatatattatttccc-ttatttttctagacagaatattg 245
||||||||||| ||||||||||||||||| |||||| || ||||||||||||||||||||
Sbjct: 388 agaaaagttaggaaatattcacatatattctttcccgttttttttctagacagaatattg 447
Query: 246 tcaagtcctctgaagatgatctgtaacctaggcttgcctaccactctcagtcctcctgcc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcaagtcctctgaagatgatctgtaacctaggcttgcctaccactctcagtcctcctgcc 507
Query: 306 ccagcctccctggttctcaggctatttgcatgcccagcaagcctaggattcacttatatt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ccagcctccctggttctcaggctatttgcatgcccagcaagcctaggattcacttatatt 567
Query: 366 ttagaaccaagaaagactcagaatgacatacaaaagtacagcaatactgtagtttctcag 425
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 568 ttagaaccaagaaagactcagaatgacgtacaaaagtacagcaatactgtagtttctcag 627
Query: 426 agtatggaacatagttgatatgggttttgctgcgtgtgaagcaatggtattcaatgtcta 485
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 628 agtatggaacatagttgatatgggtcttgctgcatgtgaagcaatggtattcaatgtcta 687
Query: 486 tgtgtgtaatatcattgttgg 506
|||||||||| ||||||||||
Sbjct: 688 tgtgtgtaatgtcattgttgg 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 908
Length adjustment: 10
Effective length of query: 496
Effective length of database: 898
Effective search space: 445408
Effective search space used: 445408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_b08.g1 MSMg01no374_b08.g1 CHROMAT_FILE:
MSMg01no374_b08.g1 PHD_FILE: MSMg01no374_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:12 2005
(443 letters)
>mm_chr6_98840374_98841216
Length = 843
Score = 714 bits (369), Expect = 0.0
Identities = 411/443 (92%), Gaps = 28/443 (6%)
Strand = Plus / Minus
Query: 1 aaatgccttggggtgagtttcaaagacataaaaataaaaacagctaatggatgttgtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aaatgccttggggtgagtttcaaagacataaaaataaaaacagctaatggatgttgtttt 411
Query: 61 gatgtgagaacagagtaatagttacggagaccggactccacccagtgactgctttccact 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 410 gatgtgagaacagagtaatagttacggagactggactccacccagtgactgctttccact 351
Query: 121 cacccctcttcagtgttggggcacactcatagataaacgcctgatggaataatgaaaatg 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 350 cacccctcttcagtgttggggcacactcatagataaacgcccgatggaataatgaaaatg 291
Query: 181 tattaagaagtgaagtctcctgtcatgggagttgctgaaattgatgccagaaactgcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tattaagaagtgaagtctcctgtcatgggagttgctgaaattgatgccagaaactgcttt 231
Query: 241 gggggaaataaaagaaaaagagttttgattttcttttcttctcttccttccttccttcct 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 230 gggggaaataaaagaaaaagagttttgattttcttttcttctcttcctttcttccttcct 171
Query: 301 tccttccttccttccttccttccttccttccttccttccttccttccttccttccttcct 360
||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tccttccttccttccttccttccttccttccttccttc---------------------- 133
Query: 361 tccttctttcctttcttttccttttgtgggaacagcatgtgagctgttaatagggatgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ------tttcctttcttttccttttgtgggaacagcatgtgagctgttaatagggatgga 79
Query: 421 ctatgatgatctactttaaggca 443
||| |||||||||||||||||||
Sbjct: 78 ctacgatgatctactttaaggca 56
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
