BAC Information

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BAC

Clone NameMSMg01-374J22
Chromosome6 (Build37)
Map Location 119,800,010 - 119,800,497
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1
Downstream geneLOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374J22.T7 (MSMg01no374_j22.b1)MSMg01-374J22.TJ (MSMg01no374_j22.g1)
ACCAG480372AG480373
length773751
length of high quality
(start - end)		491 (48 - 538)417 (58 - 474)
definitionCHROMAT_FILE: MSMg01no374_j22.b1 PHD_FILE: MSMg01no374_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:54 2005CHROMAT_FILE: MSMg01no374_j22.g1 PHD_FILE: MSMg01no374_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACAACAGTATCTGGTCCAGTCTCCCTAATGATGAGATTGCAAG
CAAGTGACACTACACCTGGCACTCCCCGGGGGATTTGTATGTGCTTGGCA
CCTGGTCCCCTTCCTCTTCTCCAGTTTCTCTCTTTTGGGATGAAAATATC
TGTCCTGTGTATGTCCCAGCTTTGTATCCTGGAAGTGTGTAACTGGTCTG
CTTCTTAGCTAGAGAGGATTTTGCCTCAGGATGACCCATCTCCAGTATCA
CTCATATATAGTTTAGATAATATAAAGACAGAATGTCTTTTATCTGAAAT
GCTGGGACCATTCTGTTTTTCAATTTGGGGGTGGGAGAAGATAAAAGGAT
ACACTTAAGGAGGTATCGAGGACAGAACCCAATTCAAAACACAAAGTTAA
TTTATTTCATATATATCTTTGTCAGCAAATATATCCTGAAAGGCACTTAA
TGCAAGTTTTTTTGGTTGTTGGTTTGATTTGGATTTGGTTTTTCAAGACA
NGGTTTCTCTGTGTANATCTGTGTATCCTGGACTCTCCTGTGTATACTGC
CTTAGCCTTGAAACCATAAATCCATTTGATTTTGTTTCTANGGTTTTGGT
TCTAAGGTTTGCTTGGCTATACCTTCCCTCTTGCGTAAACCCATCTTGCC
CTATACCCCTATCCCCAACGTTGCTAATCCTCGTTCGTAACTCCTCCTTA
TTTACTAATATTTATTCTTTTTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTTGTTTGTCTTCTTTAAGTAATTTCTTAGAGGCTGGTAGAAT
TGCTTATTTGGGTAAGGTGTGTGCTGCCAAGCTTAAGTATCTGAATTTGA
TTGTCAAACTCCTGATCACCAACTGCTACAAGGTGTCTGTAATGGCTATT
CCTGGTTGTCAACCTGATTACATCTGGGGTTGAACTGCAATTCAAAAATG
GAGGGCACATCTGTGATCCAGATCTTGAGGCTGGAAGATACAGTCTTTGA
ATCCAGATCTTGACATGTGATGACACAAGCTTTTCATCTGGATCTTGAGG
CATAGTGACTACTAAAAGCTTAGGCCCACTCATAATTGTACATGCCTTTA
GTCCCAGAAGACAAAGGTAAGCAGATCTCTGAGTTCAAAGCCAGTCTAGG
ATACCCCAAGTTCCAAGTAAAAAAAAAAAAGAAAGAAAAAAAACTTATGT
CCAGGCATGGTGGTACACACTTTTAATCTGGGCCATACCTTCTACTGGAG
GCCTATATAAAGACAATGAAAACGAAATGTTTTGTAATTGCTTGCCATAA
TTGCCAGCAATTTGTTGGAAAGAGATCTTCCGAATACAGGTGTTAAAAAA
CCAACCTTAAAACTCTACCCCCGGGGATATAACACTTTTAATATTTCAAT
TCCCTTCTACCATACCCACTTGAGTGTGGATAGGGAAACAAAAATACTTC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_j22.b1 MSMg01no374_j22.b1 CHROMAT_FILE:
MSMg01no374_j22.b1 PHD_FILE: MSMg01no374_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:54 2005
         (491 letters)



>mm_chr6_119799807_119800697
          Length = 891

 Score =  920 bits (476), Expect = 0.0
 Identities = 485/488 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacaacagtatctggtccagtctccctaatgatgagattgcaagcaagtgacac 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacaacagtagctggtccagtctccctaatgatgagattgcaagcaagtgacac 263

                                                                       
Query: 64  tacacctggcactccccgggggatttgtatgtgcttggcacctggtccccttcctcttct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tacacctggcactccccgggggatttgtatgtgcttggcacctggtccccttcctcttct 323

                                                                       
Query: 124 ccagtttctctcttttgggatgaaaatatctgtcctgtgtatgtcccagctttgtatcct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccagtttctctcttttgggatgaaaatatctgtcctgtgtatgtcccagctttgtatcct 383

                                                                       
Query: 184 ggaagtgtgtaactggtctgcttcttagctagagaggattttgcctcaggatgacccatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggaagtgtgtaactggtctgcttcttagctagagaggattttgcctcaggatgacccatc 443

                                                                       
Query: 244 tccagtatcactcatatatagtttagataatataaagacagaatgtcttttatctgaaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tccagtatcactcatatatagtttagataatataaagacagaatgtcttttatctgaaat 503

                                                                       
Query: 304 gctgggaccattctgtttttcaatttgggggtgggagaagataaaaggatacacttaagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gctgggaccattctgtttttcaatttgggggtgggagaagataaaaggatacacttaagg 563

                                                                       
Query: 364 aggtatcgaggacagaacccaattcaaaacacaaagttaatttatttcatatatatcttt 423
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 aggtatcgaggacagaacccaattcaaaacacaaagttaatttatttcatgtatatcttt 623

                                                                       
Query: 424 gtcagcaaatatatcctgaaaggcacttaatgcaagtttttttggttgttggtttgattt 483
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atcagcaaatatatcctgaaaggcacttaatgcaagtttttttggttgttggtttgattt 683

                   
Query: 484 ggatttgg 491
           ||||||||
Sbjct: 684 ggatttgg 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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