BAC Information

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BAC

Clone NameMSMg01-374M13
Chromosome6 (Build37)
Map Location 121,595,279 - 121,595,761
singlet/doubletsinglet
Overlap geneA2m
Upstream geneCecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3, LOC100043486
Downstream geneEG640530, Mug1, Mug4, Mug2, Mug-ps1, Klrg1, LOC625931, M6pr, Phc1, 1700063H04Rik, LOC677375, 4933426K21Rik, EG667035, Mfap5, Aicda, LOC667105, Apobec1, Gdf3, Dppa3, EG667107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374M13.T7 (MSMg01no374_m13.b1)MSMg01-374M13.TJ (MSMg01no374_m13.g1)
ACCAG480495AG480496
length759712
length of high quality
(start - end)		486 (73 - 558)367 (60 - 426)
definitionCHROMAT_FILE: MSMg01no374_m13.b1 PHD_FILE: MSMg01no374_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:08 2005CHROMAT_FILE: MSMg01no374_m13.g1 PHD_FILE: MSMg01no374_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTTCTTTGCGCAGGTGGAGTATCTTTCAATTCATTAGGCC
ATGTGCTATCAAAACTCACATCATAGGTATAAAGTCTGCTAAAATTATAC
CTGGTAAGCCAAAGGAAAAAAATATTGTATACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACGCCATAACCAAATG
TCTATGATCTAACCAAAAGTTAAAGTTAACAAAAAATGAATGAATTTGTC
TTAAAATTGTATATGAAGTCTATAATATCACCTGAAAGATGTATCAAGTT
GCCTTTGCAATGACCTAGTGACCTTTCTTGAAGATCTGTGACAACTTTCC
ATTGTGTTGTTGTTGTTTTTGTTTTTTTTTTCTGTTAGTAGATGTTTGAA
TGAGCTTTGTGACTCTACAAGTCAGAAGTGAGGACTGTATCTGTGCCAGT
GTGTAACTGCTGTGTATTACGGTTTCTAATGTAAAGGTCGCTTCACTGTG
GAGGCTGTAGAAGACAGGCCTAGACTTAAATAAAATAAGAGTACATTGTA
GAAGGCTCAGTTAAATGGCAGAACTTATTCAGAAACTAAAATCCTAAAAT
TTCCTAAAATCAAAGTGGCATCCATTTAAAAAGTTTCCAGAAACCCTTTA
ACACTTAACACTCGGGAAATAAATTTACTAATTTACCCCAAAATTGGTCC
CCCATAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTGTTAGTTAGCCTTTAAAACAGGCCTTAGAATGGATTCAC
TCACCTGAGAATTGACTTCTCTGCATCCAGTCTCAGTCTCACGGCAGACG
TTTATCTTCACATGTCCTGGAACAGGCTTCCCATAGGTATATCTGTCACA
AGATAAATTCACAGAAACCAAGCAACTTTCAAAAGGAGAGACGCACTGTC
TTTCACTGAGTCTGTTTAGTTTCATAACGACAACAAACATGTCCCATTTT
TATTACCTCTTGACCACTTCTAAGGGTATATGTTAAGAATTTGTGATGTA
AATTAATTGGTAGATATATAGATAGATAAATAGATAGATAGATAGATAGA
TAGATAGATAGATAGATAGATAGATNGATNNNNNNNNNNNNNTANNTTTN
TTTNTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTAATTTATA
TTTTTTTATATTATTTTTTTTTATTATTTTTATTTTAAATTATTTTTTTT
TTATTTATTATAATATTTATAATATTTTAATTATAATATATTTATTAATA
AATTTTATTATTTTTATAATTATATTAATTTTATTTTATTTTTTTAAATT
AATAATTTTTTATTTATATTTTTTATTATTTTTTATTTTTATATATATAA
AATATTATTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_m13.b1 MSMg01no374_m13.b1 CHROMAT_FILE:
MSMg01no374_m13.b1 PHD_FILE: MSMg01no374_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:08 2005
         (486 letters)



>mm_chr6_121595079_121595964
          Length = 886

 Score =  727 bits (376), Expect = 0.0
 Identities = 456/502 (90%), Gaps = 35/502 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtggagtatctttcaattcattaggccatgtgctatcaaaactcacatcataggtataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtggagtatctttcaattcattaggccatgtgctatcaaaactcacatcataggtataa 260

                                                                       
Query: 61  agtctgctaaaattatacctggtaagccaaaggaaaaaaatattgtatacacacacacac 120
           ||||||||||||||||||||||| ||||||||||||||| |||||||             
Sbjct: 261 agtctgctaaaattatacctggttagccaaaggaaaaaagtattgta------------- 307

                                                                       
Query: 121 acacacacacacacacacacacacacacacacacacacacacacgccataaccaaatgtc 180
                |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 308 -----cacacacacacacacacacacacacacacacacacacatgccataaccaaatgtc 362

                                                                       
Query: 181 tatgatctaaccaaaagttaaagttaacaaaaaatgaatgaatttgtcttaaaattgtat 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 363 tatgatctaaccaaaagttaaagttaacaaaaaatgaatgtatttgtcttaaaattgtat 422

                                                                       
Query: 241 atgaagtctataatatcacctgaaagatgtatcaagttgcctttgcaatgacctagtgac 300
           ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 423 atgaagtctataaaatcacctgaaagat-tatcaagttgcctttgcaatgacctaatgac 481

                                                                       
Query: 301 ctttcttgaagatctgtgacaactttccattgtg---ttgttgttgtttttgtt-tt-tt 355
           |||||||||||| |||||||||||||||||||||   ||||||||||| ||||| || ||
Sbjct: 482 ctttcttgaagacctgtgacaactttccattgtggtgttgttgttgttgttgttgttgtt 541

                                                                       
Query: 356 -----------ttttctgttagtagatgtttgaatgagctttgtgactctacaagtcaga 404
                      |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 542 gttgttgttgtttttctgttagtagatgtttgaatgaactttgtgactctacaagtcaga 601

                                                                       
Query: 405 agtgaggactgtatctgtgccagtgtgtaactgctgtgtattacggtttctaatgtaaag 464
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 agtgaggactgtatctatgccagtgtgtaactgctgtgtattacggtttctaatgtaaag 661

                                 
Query: 465 gtcgcttcactgtggaggctgt 486
           || |||||||||||||||||||
Sbjct: 662 gttgcttcactgtggaggctgt 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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