BAC Information

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BAC

Clone NameMSMg01-374N22
Chromosome6 (Build37)
Map Location 119,968,937 - 119,969,335
singlet/doubletsinglet
Overlap geneWnk1
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, EG406236
Downstream geneNinj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374N22.T7 (MSMg01no374_n22.b1)MSMg01-374N22.TJ (MSMg01no374_n22.g1)
ACCAG480560AG480561
length793755
length of high quality
(start - end)		255 (47 - 301)457 (57 - 513)
definitionCHROMAT_FILE: MSMg01no374_n22.b1 PHD_FILE: MSMg01no374_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:15 2005CHROMAT_FILE: MSMg01no374_n22.g1 PHD_FILE: MSMg01no374_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCC
GCGGAATTCTTCGGATTACCGTGAGCAGACCCATGGTAATCACAAAGGAC
CTTAAAAAGGAGAGGCAGAAAGGGCAAAGTGGCATGTGATTTGAAAACCT
GCCCACTATGGCTGCTTTTGCAGATGAACGGACCATGAACCAAGGAATTA
AGTTTTAGATGGCCACTGCCAGAAGCCATAAAGACCTGGAAATGAGTTTT
GGTTTGGTTTTGGGGTTTGTTTTGTTTGTTTGTTTGGTTGGTTGGTTTTT
TNANATATNNNTTATTATTTAATTTTTTTTTTTTTTTTCTAATATTTCTC
TATNTTATTATNTCCTTTTTTTTCTATTATTTTTTACANNTACTCTTACT
CTTTCATCTCTCTTCTTCTTCCCCTTCTCTTTTTCTTCTTCCTNCCCATC
TTTCCCTTTTCCTCCTTTCTACCATTTTTTCCATCCTCTCCCCTTACTTT
TCTTTTCTAATTTTTTTATCCTCCCCTTTCTCTCTCCTTATCCTCCCTAT
TTTTTATTTCTCTTTTTTCCTTTTTTCCCTCTCACCTCTTCTCTCTTCTC
TCTCACTCCCCTTCACAACTATTCTCTCTATCTTTCATTTAAATTTCCCT
CTTTCATCCCTTCTTATATCTTTTCCTTTTTTTTTCTCTTTCCTTCTCCC
CCTATTTTTAATATAACTCCTTTTCCCCCCTCCTCCATTTTCTTTTTCTT
TCCCTTTTCTCCTCTTTTCTCTTCCCAATTTTTATCTACATTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACTCTGTAGACCACATTTTCTGCCTCTGCCTTACAAGTGCAGGG
ATTAAACGTGTATGCTTCCACTGCCAGCTACATTTGCTTTCTTATATACC
CCTAGGAACTCCTGGCCAGATTTGGCATCACTCACAGTGTGCTGGGCTCC
TTCATCAAGAAAATGTCTCAAAAGACTTGCCTACAGCTATTTTCTCAATT
GAGATTCTCTCTTTCCAGATGACTTCAACTTGTATCAAGTTGACAAAAAA
CCCTAATCAGTGCATTATTTGGAAGATACGGTTTGAAGCCAATAGCTTTT
CATTCTTCTATCTCTGTAATTGGTAGTTTGGATATTATATTTAGATTGGA
AATGGTTCTTGTAGATTTTAAAGGAATGCTTTATTTTAGTTTTTGTATTA
TTGTTGGATGCTGGTAGGACACTTTGCTATTTCTTTGCTATCTCCCATTA
CTGAAAGTTTTCAAAGTTTCTTTTTTTCTTGTATTTTGAAATACACTACT
GTAAAGTGCTGTGGCGAAACTCTTATTTTTTTTTTTTTCTCTGGCTCTTA
TGGCCGGAAAAAAAGGCCCCCCATTCTGGAAAATTTTCCTCCATTATTTT
CTGCCCCAGATTCTGGTTTGGAATACTCTTATTTTTTTTTCCCCTCCCGG
TCAAACTCTTTCTATTCTCTCTTTGTCCCCCCTTTCATTACTCCCTTTCC
GAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_n22.g1 MSMg01no374_n22.g1 CHROMAT_FILE:
MSMg01no374_n22.g1 PHD_FILE: MSMg01no374_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:15 2005
         (457 letters)



>mm_chr6_119968479_119969335
          Length = 857

 Score =  772 bits (399), Expect = 0.0
 Identities = 399/399 (100%)
 Strand = Plus / Minus

                                                                       
Query: 59  cttccactgccagctacatttgctttcttatatacccctaggaactcctggccagatttg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 cttccactgccagctacatttgctttcttatatacccctaggaactcctggccagatttg 798

                                                                       
Query: 119 gcatcactcacagtgtgctgggctccttcatcaagaaaatgtctcaaaagacttgcctac 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gcatcactcacagtgtgctgggctccttcatcaagaaaatgtctcaaaagacttgcctac 738

                                                                       
Query: 179 agctattttctcaattgagattctctctttccagatgacttcaacttgtatcaagttgac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 agctattttctcaattgagattctctctttccagatgacttcaacttgtatcaagttgac 678

                                                                       
Query: 239 aaaaaaccctaatcagtgcattatttggaagatacggtttgaagccaatagcttttcatt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aaaaaaccctaatcagtgcattatttggaagatacggtttgaagccaatagcttttcatt 618

                                                                       
Query: 299 cttctatctctgtaattggtagtttggatattatatttagattggaaatggttcttgtag 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cttctatctctgtaattggtagtttggatattatatttagattggaaatggttcttgtag 558

                                                                       
Query: 359 attttaaaggaatgctttattttagtttttgtattattgttggatgctggtaggacactt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 attttaaaggaatgctttattttagtttttgtattattgttggatgctggtaggacactt 498

                                                  
Query: 419 tgctatttctttgctatctcccattactgaaagttttca 457
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgctatttctttgctatctcccattactgaaagttttca 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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