BAC Information

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BAC

Clone NameMSMg01-375C08
Chromosome6 (Build37)
Map Location 18,640,081 - 18,640,584
singlet/doubletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375C08.T7 (MSMg01no375_c08.b1)MSMg01-375C08.TJ (MSMg01no375_c08.g1)
ACCAG480772AG480773
length760754
length of high quality
(start - end)		503 (53 - 555)461 (82 - 542)
definitionCHROMAT_FILE: MSMg01no375_c08.b1 PHD_FILE: MSMg01no375_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:38 2005CHROMAT_FILE: MSMg01no375_c08.g1 PHD_FILE: MSMg01no375_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTTTTGTCTTATAGGCATTTCTTTGATTACTTCTCCTTCCA
GATCTCACCACCAAAGACCAAAAATATATTTTAAAAAATCATTAATGTTC
CTTTAGACTCAAAGAGGAGAATGAATGAAAATACTGTAGGGGCAAAGGAA
GACAGACATGTATGAAGTAGATCTGGTTATCTGGTACAGTACTGGAGAGA
GAGGAGAGAGAGAGATAAAACATTATTTGATGCAAACAAAGGAGAGGTAA
TTCTCTAACCAGAACAAATGAGCTATTAAAACATGGAATAGTAATTCTGG
CCATATTTTCAACATGAGCATAACTCTTAAAAAATTAGAATGGTTTTCTC
ATTTGGGGGTACTTCCTCCCTGTATCTACCTGGTCATTATCTATCCATAA
ATATTACTGGTCAACAATCACTTAGAGTCAAGATAAGAAATACTGGTCTA
ACTTATGTCTCTTGATGTTACTGATTAAGGATCATATCAAACATTGTAAA
CATAGTTGTACCTGTTTCCTACAGGCTACAGCTTTTTCCCAAAGCTTGCT
CTAGACAAGCTGATGAATAGGAATGGCTCTTATTATACAGGACATGCAAC
TTGATACAACTTCCAACTTAAAAATCATAGTATTATTCCACCCATCATGC
CCACTTACAAAAGGATTAATTTTGCCACTTAATTAAAAAATTTCTTCCTT
AACATTCAAN

NNNNTTACAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCC
CATTTTTTAATGGGGTTGTTTGATTTTCTGAAGTCCACCTTCTTGAGTTC
TTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGA
TCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTATTGATGGTGTCTTTT
GCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGA
TCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTGTTCCCCTGTGC
CCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTC
TCTGGTTTTATGTGAAGTTCTTTGATCCATTTAGATTTGACCTTAGTACA
AGGAGATAAGTATGGATCGATTCGCATTCTTCTACATGATAACAACCAGT
TGTGCCAGCACCATTTGTTGATAATGCTGTCTTTCTTCCACTGGATGGTT
TTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGCGGGTTTATTTT
CTGGGCCTTCAATTTCTATTCCTTCGGGTCTACTTGGCCTGCCTCTTTCC
CCGTACCTTGGCCGTTTTTACCATCATTGGTTCTGGACTTACACCCTTTT
CCTTCGGCCTTTTTGCATCCTCCCCCTTATTTCTTTTTTATTTTTTGTTA
AAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_c08.b1 MSMg01no375_c08.b1 CHROMAT_FILE:
MSMg01no375_c08.b1 PHD_FILE: MSMg01no375_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:38 2005
         (503 letters)



>mm_chr6_18639876_18640784
          Length = 909

 Score =  932 bits (482), Expect = 0.0
 Identities = 496/504 (98%), Gaps = 6/504 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   aatttttgtcttataggcatttctttgattacttctccttccagatctcaccaccaaaga 65
           ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 206 aatttttgtcttaaaggcatttctttgattacgtctccttccagatctcaccaccaaaga 265

                                                                       
Query: 66  ccaaaaatatattttaaaaaatcattaatgttcctttagactcaaagaggagaatgaatg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ccaaaaatatattttaaaaaatcattaatgttcctttagactcaaagaggagaatgaatg 325

                                                                       
Query: 126 aaaatactgtaggggcaaaggaagacagacatgtatgaagtagatctggttatctggtac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaaatactgtaggggcaaaggaagacagacatgtatgaagtagatctggttatctggtac 385

                                                                       
Query: 186 agtactggagagagaggagagagagaga------taaaacattatttgatgcaaacaaag 239
           ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||
Sbjct: 386 agtactggagagagaggagagagagagagagagataaaacattatttgatgcaaacaaag 445

                                                                       
Query: 240 gagaggtaattctctaaccagaacaaatgagctattaaaacatggaatagtaattctggc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gagaggtaattctctaaccagaacaaatgagctattaaaacatggaatagtaattctggc 505

                                                                       
Query: 300 catattttcaacatgagcataactcttaaaaaattagaatggttttctcatttgggggta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 catattttcaacatgagcataactcttaaaaaattagaatggttttctcatttgggggta 565

                                                                       
Query: 360 cttcctccctgtatctacctggtcattatctatccataaatattactggtcaacaatcac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cttcctccctgtatctacctggtcattatctatccataaatattactggtcaacaatcac 625

                                                                       
Query: 420 ttagagtcaagataagaaatactggtctaacttatgtctcttgatgttactgattaagga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttagagtcaagataagaaatactggtctaacttatgtctcttgatgttactgattaagga 685

                                   
Query: 480 tcatatcaaacattgtaaacatag 503
           ||||||||||||||||||||||||
Sbjct: 686 tcatatcaaacattgtaaacatag 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 909
Length adjustment: 10
Effective length of query: 493
Effective length of database: 899
Effective search space:   443207
Effective search space used:   443207
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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