BAC Information

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BAC

Clone NameMSMg01-375G21
Chromosome6 (Build37)
Map Location 21,637,220 - 21,637,555
singlet/doubletsinglet
Overlap geneKcnd2
Upstream geneLOC100041343
Downstream geneTspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375G21.T7 (MSMg01no375_g21.b1)MSMg01-375G21.TJ (MSMg01no375_g21.g1)
ACCAG480985AG480986
length758749
length of high quality
(start - end)
435 (55 - 489)420 (84 - 503)
definitionCHROMAT_FILE: MSMg01no375_g21.b1 PHD_FILE: MSMg01no375_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:01 2005CHROMAT_FILE: MSMg01no375_g21.g1 PHD_FILE: MSMg01no375_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNTTTTNTTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGCTGGCTGGTCTTCCCCACTGCCATGCTGAGACCC
TTTAGTATAGTTCCTCGTGTTGTCATGATAACCAACCAAAAAATCATTTT
TTTTTTTTGCTATTTCACAACTATAAGTTTGCTACTGTTATGAACTGCAG
TGGAAACATTTTTCAAGACAGAGGTTTCAGTCATAACCAGACAAGAGAAA
GAAAAGATGCATTGTTCTCCCTGTTTCTGGAGCTCTTGTGAGATTAATCT
CTATTGCTTATAAGTTTCCCAGTCTGTGGTATTTTGTGATAGTAACAGCA
CACATTGGACCATTGCAAAGACTTTATTTTTTGTCTTACAAAGGGCTCTC
AGCATCATATAACCTTCAGATCCATGATGGTTGGAAGCATATGTGGTTAA
AATTCTGTCCATTGTATCATCAGGACATTGCATGCATGGNTCAAACAAAC
AAATTTACGGCATTGTATAACTTGTTTTGTGTTTGGGTCCATGTGGCTAT
ATGCATTTTTATAACACTACCTAAAATTAATCCCTAAAAGTTTTTAAGGG
CTTTCTGTTTATCGCACCCAAAAAAAAAAACCCCCCCCCCCAACCATTAT
TCTTCTTAAAAACAGGGGGACTTTCTTTAAAAAAACCGGGAAAAAAAAAA
TGTATTATTTGAAGGCCCCCCAATTTTTGAAACCCCACCCCGTTTTTTTT
TTCCCAAA
NNNNTTTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCG
AATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAACG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCG
GAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAAC
AGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATA
CAGNAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAA
GAAAGAATTTATGAAATTCTAGCCCAATGGATGGACCGGGAGGGCATCAT
CCTGAAGGAGGGACCACTTTCCCAAAAAAATCCCCCAATATGTATTCCCT
GAAAAGGGGAATTAATCCCCACCCTAGAATACCCACAAAAAAAAAATAAT
TTGCTAACCCATGAAACTTCTAAAAAAGAAAATGAAGGGGGGGACCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_g21.b1 MSMg01no375_g21.b1 CHROMAT_FILE:
MSMg01no375_g21.b1 PHD_FILE: MSMg01no375_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:01 2005
         (435 letters)



>mm_chr6_21636721_21637555
          Length = 835

 Score =  636 bits (329), Expect = 0.0
 Identities = 335/337 (99%), Gaps = 2/337 (0%)
 Strand = Plus / Minus

                                                                       
Query: 100 tttttgctatttcacaactataagtttgctactgttatgaactgcagtggaaacattttt 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tttttgctatttcacaactataagtttgctactgttatgaactgcagtggaaacattttt 776

                                                                       
Query: 160 caagacagaggtttcagtcataaccagacaagagaaagaaaagatgcattgttctccctg 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 caagacagaggtttcagtcataaccagacaagagaaagaaaagatgcattgttctccctg 716

                                                                       
Query: 220 tttctggagctcttgtgagattaatctctattgcttataagtttcccagtctgtggtatt 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tttctggagctcttgtgagattaatctctattgcttataagtttcccagtctgtggtatt 656

                                                                       
Query: 280 ttgtgatagtaacagcacacattggaccattgcaaag-actttattttttgtcttacaaa 338
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 655 ttgtgatagtaacagcacacattggaccattgcaaagca-tttattttttgtcttacaaa 597

                                                                       
Query: 339 gggctctcagcatcatataaccttcagatccatgatggttggaagcatatgtggttaaaa 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gggctctcagcatcatataaccttcagatccatgatggttggaagcatatgtggttaaaa 537

                                                
Query: 399 ttctgtccattgtatcatcaggacattgcatgcatgg 435
           |||||||||||||||||||||||||||||||||||||
Sbjct: 536 ttctgtccattgtatcatcaggacattgcatgcatgg 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)