Query= MSMg01no375_h07.b1 MSMg01no375_h07.b1 CHROMAT_FILE:
MSMg01no375_h07.b1 PHD_FILE: MSMg01no375_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:03 2005
(517 letters)
>mm_chr6_52657832_52658750
Length = 919
Score = 969 bits (501), Expect = 0.0
Identities = 513/517 (99%), Gaps = 3/517 (0%)
Strand = Plus / Minus
Query: 1 tagatttgcagcaactcactttaaaaataaattattcatttatttttattttataggtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tagatttgcagcaactcactttaaaaataaattattcatttatttttattttataggtat 609
Query: 61 gcataatttctgtgcctggtattcagggaggccaaaagaaggcgttggatcctcacaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gcataatttctgtgcctggtattcagggaggccaaaagaaggcgttggatcctcacaaac 549
Query: 121 tagagtttcagacaattgtgagcccccatgtgggttctgggaatccaacccatccctaat 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 548 tagagtttcagacaattgtgagcccccatgtgggttctaggaatccaacccatccctaat 489
Query: 181 tcacttcctttaaaaaacaaacaaacaacaacaacaa-aa-aaaaactgttgaagggcct 238
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 488 tcacttcctttaaaaaacaaacaaacaacaacaacaacaacaaaaactgttgaagggcct 429
Query: 239 aaaaaacaatgggagaaggggaaaaactagtgataggctgctgccatgctaatgaagtac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaaaaacaatgggagaaggggaaaaactagtgataggctgctgccatgctaatgaagtac 369
Query: 299 ctctcagttctaaacccccctctttttgcacttgggtactttaagaataattctcttttg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ctctcagttctaaacccccctctttttgcacttgggtactttaagaataattctcttttg 309
Query: 359 acagctggcagtgttaaaatgtctagggcaggtggaaagtactggagaggctacagggaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 acagctggcagtgttaaaatgtctagggcaggtggaaagtactggagaggctacagggaa 249
Query: 419 a-ggactctacttcctggttcctgtgtactcaataaacagactctggcagtatacgtggc 477
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaggactctacttcctggttcctgtgtactcaataaacagactctggcagtatacgtggc 189
Query: 478 ttttccaatgtccaaatctcacacccactcagctttt 514
|||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttttccaatgtccaaatctcacacccactcagctttt 152
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 919
Length adjustment: 10
Effective length of query: 507
Effective length of database: 909
Effective search space: 460863
Effective search space used: 460863
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_h07.g1 MSMg01no375_h07.g1 CHROMAT_FILE:
MSMg01no375_h07.g1 PHD_FILE: MSMg01no375_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:03 2005
(463 letters)
>mm_chr6_52527207_52528069
Length = 863
Score = 872 bits (451), Expect = 0.0
Identities = 460/463 (99%)
Strand = Plus / Plus
Query: 1 ataattagaaaaacccacacgtaatttactggctcctctggcggttctggttcattagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataattagaaaaacccacacgtaatttactggctcctctggcggttctggttcattagca 260
Query: 61 gttgattactaaacagtgacctctagtggcccataactttctaatgctgtatgacttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgattactaaacagtgacctctagtggcccataactttctaatgctgtatgacttctc 320
Query: 121 aaaagagcaagataggaagaacccgcttaccctaaataaggcaattactttttcctatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagagcaagataggaagaacccgcttaccctaaataaggcaattactttttcctatag 380
Query: 181 aggggaacactaatctttcctacttacaatacattctttatgacaatataaagtcctccg 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggggaatactaatctttcctacttacaatacattctttatgacaatataaagtcctccg 440
Query: 241 caaacctatggcttctgcccaaatgacacacattatttagtaaattataactgagcacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaacctatggcttctgcccaaatgacacacattatttagtaaattataactgagcacct 500
Query: 301 gcctaagatctgggctgagtgctaaagatagtcactaaaacatcacaatcgactgaattc 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctaagatctgggctgagtgctgaagatagtcactaaaacatcacaatcgactgaattc 560
Query: 361 tttcaccaaaaactaaaacgacattaatatataactgtcacagtactatttattctctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcaccaaaaactaaaacgacattaatatataactgtcacagtactatttattctctgt 620
Query: 421 tcacacacacaaacatgctaaaagcacacttcaaaattcaaag 463
||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 tcacacacacaaacatgctaaaaccacacttcaaaattcaaag 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
