Query= MSMg01no375_i10.b1 MSMg01no375_i10.b1 CHROMAT_FILE:
MSMg01no375_i10.b1 PHD_FILE: MSMg01no375_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:09 2005
(244 letters)
>mm_chr6_51707439_51708082
Length = 644
Score = 472 bits (244), Expect = e-138
Identities = 244/244 (100%)
Strand = Plus / Minus
Query: 1 aaatgatccaaataattatcctttgtggaagccataatatttcacttagaggaaggcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaatgatccaaataattatcctttgtggaagccataatatttcacttagaggaaggcagt 385
Query: 61 gggatccttgggcagctcggccctcctccacaggatataaactgctcaagtagaccccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggatccttgggcagctcggccctcctccacaggatataaactgctcaagtagaccccag 325
Query: 121 agtgcagggccatttgcgagcgacatcgcacaattcacaggatgtttccttgcagacact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtgcagggccatttgcgagcgacatcgcacaattcacaggatgtttccttgcagacact 265
Query: 181 gaatgaactaattctgctaatagagtatttgatttaatggcacattaaaggggaaagggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaatgaactaattctgctaatagagtatttgatttaatggcacattaaaggggaaagggg 205
Query: 241 agcg 244
||||
Sbjct: 204 agcg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no375_i10.g1 MSMg01no375_i10.g1 CHROMAT_FILE:
MSMg01no375_i10.g1 PHD_FILE: MSMg01no375_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:09 2005
(409 letters)
>mm_chr6_51540322_51541130
Length = 809
Score = 717 bits (371), Expect = 0.0
Identities = 404/427 (94%), Gaps = 20/427 (4%)
Strand = Plus / Plus
Query: 1 catcatttatgttttaacggcgtttttttggaaagcataaattgtgacatcagttatcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 catcatttatgttttaacggcgtttttttggaaagcataaattgtgacatcagttatcat 244
Query: 61 gctacttcttggtgacataatataacctttgaagttaatatgaagtgatgtttgctccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gctacttcttggtgacataatataacctttgaagttaatatgaagtgatgtttgctccat 304
Query: 121 aaactccacagtcactgttttcacattaaacatgaaagcaaagcaaaacaaaactttgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aaactccacagtcactgttttcacattaaacatgaaagcaaagcaaaacaaaactttgtt 364
Query: 181 cgatttcttactttacataggagaatatatttcctctaactcagacctaaggtctgtg-- 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cgatttcttactttacataggagaatatatttcctctaactcagacctaaggtctgtgat 424
Query: 239 ----------------ttttgtttttttttttgggtaattactggtaatttctcattgaa 282
|||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 425 ttttttttttttttttttttttttttttttttg--taattactggtaatttctcattgaa 482
Query: 283 gagctctggtcagacttggtttgaggctccctgcgttatatttgctctgctttggctgtc 342
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 483 gagctctggtcagacttggtttgaggctccctgcgttgtatttgctctgctttggctgtc 542
Query: 343 aaaacagctgatccccagcaagcgtcttcaaactgactttttggggtctagatagttcca 402
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aaaacagctgagccccagcaagcgtcttcaaactgactttttggggtctagatagttcca 602
Query: 403 tttccaa 409
|||||||
Sbjct: 603 tttccaa 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
