BAC Information

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BAC

Clone NameMSMg01-375K07
Chromosome6 (Build37)
Map Location 19,239,671 - 19,240,115
singlet/doubletsinglet
Overlap genenone
Upstream geneCftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375K07.T7 (MSMg01no375_k07.b1)MSMg01-375K07.TJ (MSMg01no375_k07.g1)
ACCAG481147AG481148
length777764
length of high quality
(start - end)		444 (79 - 522)422 (84 - 505)
definitionCHROMAT_FILE: MSMg01no375_k07.b1 PHD_FILE: MSMg01no375_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:18 2005CHROMAT_FILE: MSMg01no375_k07.g1 PHD_FILE: MSMg01no375_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAGGA
TCCGCGGAATTCATTTCACTGTCATTTTAATATGATTTCTAAAAGATCAG
TTGTATCCATAAAGATATCATACAAGGTAATTAATGAGAGTAATCAACAA
TTGAAAGCATTTGGACAACTGGACTATCAAGTGCTTTCTTCCCCAGCCTC
CAAGACAGGGTTTCTACCCTGATTCTCAGGGTTCAGTGATGGGCAGCTCT
AAGCTGTGTTACTTTACTAGTTTGTTTTCTAAAAATTACACCATCTGAGA
CACAACTCATTTCTTAAAAACAAGCTGGTTTTCAGATTTTGAAAATTATA
AGGCTAGAATCTGTTTCAGGCACTTAATTATATATCTTTTTCTTTTTAAA
AAAATTGGATTCTTCTCTCATAGAATGCTCACAATCCTGACAATAGTTTC
CTCTCCGTTTACTCTACTCAGTCCCAAGCTCCACTCTTCCCTTGCTTAAC
TGCTCCTCCATTTCCCTTCAGAAAACAGCAGGGCTCATGGGGATAACAAC
CAAACTCTGCAGAACACAAGCAGTAAGACTAGGCACAAACTTTTTTTTTT
GTTTTCCCTTTTTTAATAGGAAAGGATCTCCATTTAAATTTCCAACGCAT
CCCTAAAAAATTTTCCGGGCCCTTCCCCCCATTTCCCCCCTCAATTTTCA
ATTTTTGGTTCCCCAGGGTTTCCCCTATCACTCAGTCTGTCTACGACTTT
TATTAACCAAATTTTCGCTTCCTTTTT

TTTTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCG
AATGGCAGAGAAACACCTGAAAAAATGTTCAACATACTTAATCATCAGGG
AAATACAAATCAAAACTACCCTGAGATTCCACCTCACAGCTGTCAGAATG
GCTAAAATCAAAAATTCAGGTGACAGCAGATGCTGGAGAGGATGTGGAGA
AAGAGGAACATTCCTCCATTTGTGGTGGGATTGCAAGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCG
GAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAAC
CGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTACATCTACACAATGGAATACTACTCAGCTATTACAAA
GAATGAATTTATGAAATTTCCTACCAAATGGATGGACCTGGAGGGCATCA
TCCTGAGTGAGGGAAACATTCCCCAAGGAATCCCCTTATAAGTACTCCCT
GATAATGGGATTTTAACCCACCACCTAGCAATCCCATCACAATATATAAC
CTTTTGGTAACCCCTCGAAAACTCCTACAAAATGGAAAAATTGACTGGGG
TTTCCTTTCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_k07.b1 MSMg01no375_k07.b1 CHROMAT_FILE:
MSMg01no375_k07.b1 PHD_FILE: MSMg01no375_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:18 2005
         (444 letters)



>mm_chr6_19239471_19240314
          Length = 844

 Score =  837 bits (433), Expect = 0.0
 Identities = 442/445 (99%), Gaps = 1/445 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatgatttctaaaagatcagttgtatccataaagatatcatacaaggtaattaatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatgatttctaaaagatcagttgtatccataaagatatcatacaaggtaattaatgag 260

                                                                       
Query: 61  agtaatcaacaattgaaagcatttggacaactggactatcaagtgctttcttccccagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaatcaacaattgaaagcatttggacaactggactatcaagtgctttcttccccagcc 320

                                                                       
Query: 121 tccaagacagggtttctaccctgattctcagggttcagtgatgggcagctctaagctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaagacagggtttctaccctgattctcagggttcagtgatgggcagctctaagctgtg 380

                                                                       
Query: 181 ttactttactagtttgttttctaaaaattacaccatctgagacacaactcatttcttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 ttactttactagtttgttttctaaaaattacaccatctgagacacaactcatttcttgaa 440

                                                                       
Query: 241 aacaagctggttttcagattttgaaaattataaggctagaatctgtttcaggcacttaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaagctggttttcagattttgaaaattataaggctagaatctgtttcaggcacttaat 500

                                                                       
Query: 301 tatatatctttttctttttaaaaaaa-ttggattcttctctcatagaatgctcacaatcc 359
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 tatatatctttttctttttaaaaaaaattggattcttctctcatagaatgctcacaatcc 560

                                                                       
Query: 360 tgacaatagtttcctctccgtttactctactcagtcccaagctccactcttcccttgctt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgacaatagtttcctctccgtttactctactcagtcccaagctccactcttcccttgctt 620

                                    
Query: 420 aactgctcctccatttcccttcaga 444
           ||||||||||||||||| |||||||
Sbjct: 621 aactgctcctccatttctcttcaga 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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