BAC Information

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BAC

Clone NameMSMg01-375L09
Chromosome6 (Build37)
Map Location 129,021,148 - 129,021,563
singlet/doubletsinglet
Overlap genenone
Upstream geneTspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f
Downstream geneClec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375L09.T7 (MSMg01no375_l09.b1)MSMg01-375L09.TJ (MSMg01no375_l09.g1)
ACCAG481199AG481200
length791796
length of high quality
(start - end)		440 (51 - 490)416 (80 - 495)
definitionCHROMAT_FILE: MSMg01no375_l09.b1 PHD_FILE: MSMg01no375_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:23 2005CHROMAT_FILE: MSMg01no375_l09.g1 PHD_FILE: MSMg01no375_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGCATATTGCCACACTTTTGACTTATTCAAACATCAGCAG
AAAAATTATATATGTGCAGATCAAGGTGTCAGCAGCAAAAAAATATGTGT
AGGAGTTCTGAGAGTTGGGTGTTTATCAATGCTATCGGAGTATCTGGTCA
GTTTGACTCAGTTCAGATAGCCCTGTTATGTCCTCACATTCCTCTTTATC
TTTATGTTCTCAGGAATGCTTTAACTGCAGGGCATGCGGGTTTGTTTTTC
TTTATTCTCAGCCCCAGGCAGTCTCTATGCTCACAAACAACCAGCAGTTT
CTGAGTACTTTATATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCAC
CATTGCCTCCTGAATACTGGGATTAAAATCATGTGCCACTAAACCCGGAT
TATCAATAGAGTTCTTAATCCTAATAAGCACATTTCCACTATAGGATCTA
ATCATATAACCCCAAATTCAAATTTTAAGCCCTCTTTGATTGTCTTTTAA
CCAAAATATGATTCAGTATATTCTCACAGTCCCGGCTTTTGATATTTCTT
TGTCTCCTCAAATATAAACTTATATTTGTTTCTTCCAAAGGATTAATAAT
TCTAGCCTCCCTCCAAAGAAGTTTNCAACCTCCTTTCTTTTTCGCGGCCA
CACTCCATTTTTCACTACTTCAAATTTTCTTCCCTTAATTTATTTTCTTC
TTCCCCCCCATTAATAACTACCCTTTTCTTCTTCCTCTAAG

NNNCCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAGGTCCCTGCATCTTGG
AGAACATCCATCGCAGCCATGCAAAATGGTGGACCACCTCCAGAAAACTT
ACTTGTTTGCCATAGACTTTCCTGTATGGTGTCTGACACTACAACAATCT
TCACAGGATAAATTATTCAGGGGATATCTTGGTGATATTAAATAGGCACC
TTCCCTTGAGGTCCCTCAGGGGGAGCTTAAATTAGTCCTATTTATAGTTG
TTAGGGTTGGAAATGGAGCTTATTATTTGATAGGATTAATTTCCAACATG
TTATTGCATTGTGGCTTAAAGTTCAGGCACAGCCAGCAATCCAAACCTAT
TTCTAGTTGAAAATTATGAAAGATTGATATACTCTTTCTAGCATCATGAA
TACTGAGTGACTGGTTTCCACTGCATTATGAACCTTTATCTTTGAGGTTA
CCAAAGATGTTCCTGGGGAAACTGGAGTTTTGGACTTTGCCTCCTTAAAG
GGTTCCTCTTGCGTGTGGCCCAATTGGTCAGGAAAAAATGATCCTTTTTC
CGGAACCTTTTTGCATCTTTTTATTCCTCCCGTGTTCTCCCTTCTCCTTA
ATCCCCCTTGGGTACATCTTCCTTCCTTCATTTATCCCCTCTTGTAGAAA
TTTTCCTCTTTGTAAAAACACCCCCCCAACACCCGGTGTTCCCCCCTTCT
TTTTATTCCCCAATTTTTCTTTCCTCTTTTAGCTCAAACTGCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_l09.g1 MSMg01no375_l09.g1 CHROMAT_FILE:
MSMg01no375_l09.g1 PHD_FILE: MSMg01no375_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:23 2005
         (416 letters)



>mm_chr6_129020839_129021654
          Length = 816

 Score =  797 bits (412), Expect = 0.0
 Identities = 415/416 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaggtccctgcatcttggagaacatccatcgcagccatgcaaaatggtggaccacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tctgaggtccctgcatcttggagaacatccatcgcagccatgcaaaatggtggaccacct 666

                                                                       
Query: 61  ccagaaaacttacttgtttgccatagactttcctgtatggtgtctgacactacaacaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ccagaaaacttacttgtttgccatagactttcctgtatggtgtctgacactacaacaatc 606

                                                                       
Query: 121 ttcacaggataaattattcaggggatatcttggtgatattaaataggcaccttcccttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttcacaggataaattattcaggggatatcttggtgatattaaataggcaccttcccttga 546

                                                                       
Query: 181 ggtccctcagggggagcttaaattagtcctatttatagttgttagggttggaaatggagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ggtccctcagggggagcttaaattagtcctatttatagttgttagggttggaaatggagc 486

                                                                       
Query: 241 ttattatttgataggattaatttccaacatgttattgcattgtggcttaaagttcaggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 485 ttattatttgataggattaatttccaacatgttattgcattgtggcttagagttcaggca 426

                                                                       
Query: 301 cagccagcaatccaaacctatttctagttgaaaattatgaaagattgatatactctttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cagccagcaatccaaacctatttctagttgaaaattatgaaagattgatatactctttct 366

                                                                   
Query: 361 agcatcatgaatactgagtgactggtttccactgcattatgaacctttatctttga 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agcatcatgaatactgagtgactggtttccactgcattatgaacctttatctttga 310


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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