Query= MSMg01no375_l12.b1 MSMg01no375_l12.b1 CHROMAT_FILE:
MSMg01no375_l12.b1 PHD_FILE: MSMg01no375_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:24 2005
(473 letters)
>mm_chr6_109505018_109505890
Length = 873
Score = 694 bits (359), Expect = 0.0
Identities = 431/473 (91%), Gaps = 29/473 (6%)
Strand = Plus / Minus
Query: 1 tcccattgaataaatgcaaaatacatgttgactatttaacaggaagggtcttctccagta 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 456 tcccattgaataaatgcaaaatgcatgttgactatttaacaggaagggtcttccccagta 397
Query: 61 ctgatggagggtaaaataagtagttagctgcccacatgaatggattccatgcagggagac 120
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 396 ctgatggagcataaaataagtagttagctgcccacatgaatggattccatgcatggagac 337
Query: 121 agtcaggtaagtcatacttcctgtccagtactgtcagtttggccatcactgccaggcgtc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 336 agtcaggtaagtcatacttcctgtccagtactgtcagtttggccatcactgccaggggtc 277
Query: 181 tttagtggagggttctcattatttccctcagtaggaacataaggactctgtaaaatttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tttagtggagggttctcattatttccctcagtaggaacataaggactctgtaaaatttat 217
Query: 241 gtgttgcctcacaaaatcaaacaaacaaacaaacaaacaaacaaaaaacaatattcttta 300
|||||||||||||||| |||||| |||||||||
Sbjct: 216 gtgttgcctcacaaaa--------------------------aaaaaa---tattcttta 186
Query: 301 gaattcccctttctgcacccaaggaactaaagggaactgcaaccctataggtggaacaac 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 185 gaattcccctttctgcacccaaggaactaaaggtaactgcaaccctataggtggaacaac 126
Query: 361 aatatgaactaacaagtatcccggagctcttgtctctagctgcatatgtatcaaaagatg 420
||||||||||||| |||| |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 125 aatatgaactaaccagtaccccggaactcttgtctttagctgtatatgtatcaaaagatg 66
Query: 421 gcctagtaggccatcactggaaagagaggcccattggacttgcaaactttata 473
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gcctagtcggccatcactggaaagagaggcccattggacttgcaaactttata 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_l12.g1 MSMg01no375_l12.g1 CHROMAT_FILE:
MSMg01no375_l12.g1 PHD_FILE: MSMg01no375_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:24 2005
(501 letters)
>mm_chr6_109362322_109363221
Length = 900
Score = 895 bits (463), Expect = 0.0
Identities = 488/501 (97%), Gaps = 9/501 (1%)
Strand = Plus / Plus
Query: 1 ctgctgaaaacctagcttgcctttcaagacttgctgaataggacaaaaaaagtgtgtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgctgaaaacctagcttgcctttcaagacttgctgaataggacaaaaaaagtgtgtttc 260
Query: 61 tggactaacctagaactcagtttaataatttcttctctcaaagaggttcatctgcaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggactaacctagaactcagtttaataatttcttctctcaaagaggttcatctgcaattt 320
Query: 121 cctttttaccaggaagagaagggtcaggatgtaacttttcttgtagtgtgttcctactag 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttttaccaggaagagaagggtcaggatgtaacttttcttgtagtgtgttcctactag 380
Query: 181 ctgaccctcttgttttaaaacagaaaaattatgtgtgtttctattttcagttagtttctc 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaccctcttgttttaaaagagaaaaattatgtgtgtttctattttcagttagtttctc 440
Query: 241 aaaaagatattcctagaccaatactgggtatcatcagcctatttcaacaagttagaattg 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaagataa-cctagaccaatactgggtatcatcagcctatttcaacaagttagaattg 499
Query: 301 ttttatgagcatattcctttaccaatctgccctttaattcacatattccccttacttaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttttatgagcatattcctttaccaatctgccctttaattcacatattccccttacttaaa 559
Query: 361 tgaaaatattaattaaatgactttatggtctgagatgttttatacacacacacacacaca 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 560 tgaaaatattaattaaatgactttatggtctgagatgttttatacacacatacacacaca 619
Query: 421 cacacacacacacacacacacacacacacacacacttaataaagcagaggacccggcagg 480
||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 620 cacacacacacacacacacacacacac--------ttaataaagcagaggacccggcagg 671
Query: 481 taatagattcttaataaatgt 501
|||||||||||||||||||||
Sbjct: 672 taatagattcttaataaatgt 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 900
Length adjustment: 10
Effective length of query: 491
Effective length of database: 890
Effective search space: 436990
Effective search space used: 436990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
