BAC Information

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BAC

Clone NameMSMg01-376B10
Chromosome6 (Build37)
Map Location 78,547,806 - 78,548,318
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna2, LOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
Downstream geneLOC384440, LOC621815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376B10.T7 (MSMg01no376_b10.b1)MSMg01-376B10.TJ (MSMg01no376_b10.g1)
ACCAG481489AG481490
length734746
length of high quality
(start - end)		520 (47 - 566)500 (75 - 574)
definitionCHROMAT_FILE: MSMg01no376_b10.b1 PHD_FILE: MSMg01no376_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:53 2005CHROMAT_FILE: MSMg01no376_b10.g1 PHD_FILE: MSMg01no376_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTGTGTACCAAAAATGAGAAGGGGAGGCTCTACTAACAAAGGC
ATCTCAAACATCAGTGGGTTAGAGGGCTGTTCAGGGTCTTTTTCTTCATC
CTTCCACACAGCCAGCTACTTCAGCTACCTGTTGGAGCCTGCCTGTAGCT
TAGTATATCCATGTTGTAAACTAGAACAACAAGCCCTATTAATCTCTTAT
ATCATTACTGCCGTACTATTTCATTAGTTTAATTCCTGTTACAAATCTCT
CAATCAATTCTCCCCACAGTGGATTTGAATCATAAACTGACATTTGATAT
TGAGACAATAGCCTGACCATCCTCCCCAGGTTATTGGATCAGAAGATAGT
CTAGACTCAACAACTTCAAAGCCCTTCCATCTAAAGGCTTCCCATCCTTA
AGTTAAGAAATGTCTTTCAACCTAGTTTCTGAGAGATTTGTGTTCACAGT
TTTATCTTTTCCAGTANAAATAACCATGGAGTAAGCAGGTCCAATCAGGA
TATATGAATAGAANAAGAAGGGAGTGGATCTTAGAAGCAGGAAGCAATAC
TTTCTGAGAAAACCTAACACCCATTTCCTACAAAAGAGATAAAACAGTTT
TGTGGGTGAGTCCCCCCCCCCCAAAAAAATCTTAAAAAGGTGAAAAAAAA
CCTTCCCCGGGGGGGGGAATTCTCCAGCACCTGG

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACGGAATGGCAGA
GAAGCACCTGAAAAACTGTTCAACATCCTTAATCATCAAGGAAATGCAAA
TCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGAGATCAAAA
ACTCAGGTGAGAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTC
CTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCTGAGCATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAGAAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCACTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATTTATACAATGGAATACTACTCACCTATTAAAAAAATGAATTTATGA
AATTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAAGTA
ACCCAATCACAAGGGAACTCGCACAATAAGTACTCACTGATAAGGGGATA
TTAGCCCAGAAACTTAGAATACCCAGAAGAAGAAACAATTGGCCAACCCA
TGTGAATCACAAAAAAGAAAAACAATTGGGGCTCTTCCTCCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_b10.b1 MSMg01no376_b10.b1 CHROMAT_FILE:
MSMg01no376_b10.b1 PHD_FILE: MSMg01no376_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:53 2005
         (520 letters)



>mm_chr6_78547602_78548521
          Length = 920

 Score =  986 bits (510), Expect = 0.0
 Identities = 512/513 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttgtgtaccaaaaatgagaaggggaggctctactaacaaaggcatctcaaaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gaattccttgtgtaccaaaaatgagaaggggaggctctactaacaaaggcatctcaaaca 658

                                                                       
Query: 65  tcagtgggttagagggctgttcagggtctttttcttcatccttccacacagccagctact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tcagtgggttagagggctgttcagggtctttttcttcatccttccacacagccagctact 598

                                                                       
Query: 125 tcagctacctgttggagcctgcctgtagcttagtatatccatgttgtaaactagaacaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tcagctacctgttggagcctgcctgtagcttagtatatccatgttgtaaactagaacaac 538

                                                                       
Query: 185 aagccctattaatctcttatatcattactgccgtactatttcattagtttaattcctgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aagccctattaatctcttatatcattactgccgtactatttcattagtttaattcctgtt 478

                                                                       
Query: 245 acaaatctctcaatcaattctccccacagtggatttgaatcataaactgacatttgatat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 acaaatctctcaatcaattctccccacagtggatttgaatcataaactgacatttgatat 418

                                                                       
Query: 305 tgagacaatagcctgaccatcctccccaggttattggatcagaagatagtctagactcaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tgagacaatagcctgaccatcctccccaggttattggatcagaagatagtctagactcaa 358

                                                                       
Query: 365 caacttcaaagcccttccatctaaaggcttcccatccttaagttaagaaatgtctttcaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 caacttcaaagcccttccatctaaaggcttcccatccttaagttaagaaatgtctttcaa 298

                                                                       
Query: 425 cctagtttctgagagatttgtgttcacagttttatcttttccagtanaaataaccatgga 484
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 297 cctagtttctgagagatttgtgttcacagttttatcttttccagtaaaaataaccatgga 238

                                            
Query: 485 gtaagcaggtccaatcaggatatatgaatagaa 517
           |||||||||||||||||||||||||||||||||
Sbjct: 237 gtaagcaggtccaatcaggatatatgaatagaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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