NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACGAGAGCTTTCAGGTTGGCAGTTTCCTAAAAGAACAAACAAA
CTGCACACTACTAACACGATTTGCACATCAAACCTGGGTAAACTCTCTGA
GAAAAACAAGAGTGGGACATTGAGTGTAGCTCAGTTGATAGAGTGCTTGC
ATGATGTGCAAGAAGCCCTTCATCCCACCCCCCAGTACCATAGTAAACCC
CGGCACGGTGGAACGGCTCAATCTCAGCATCGCAGAGGTGGGGGCAAGAG
GACCAGAAGTTCAGGGCTATCCTCAGCTAACCAGAACTCAAGGCCAGACT
GGGATGCATGAGAACCTGTCTCAAAATATGTCACAAAGATAAAATGATAA
AGAAACTCAGGAAAAGATCTTGTCAGCACCGTGTCGGGAGTCCCTAGCAT
CCCAGGCCACCCTTGGGGTCATCCTTTTGTTGGTGTCTCATGCACATATC
TGCCCAGGGTAGTTTTGTGCTGGGACTAGGAAGTATGAGTGTGACTATGC
TCTCTCTCTCTGTCTCTCTCTCTGTCTCTCTCTCTCTCTGTCTCTCTGTT
TGTCTGGCTCTGTGNGNGGCTGTCTGTCTCTGTCTGGCTGNCTGTCTCTC
TCTGTGNGNCTGCCTGTCCGGCCGTCTCCCCTGGGCTGCCCCTGGCTCTC
TCTCCGGGGCCCTCCCTTGCCCCCCCCCCGGGCTCTCCCCCCGGCCCCCG
GCCCCCTGGCC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACATCAGCAACACAATCCCACTCAT
TTCCCCATGCCTTCAGATTTGCCATCTGCCCTTGCAACCTCCCCTCCAGA
AGAAAATAAAAAAGAAATAAAGAAAACAAAGACAAAAACAAAAAACCTCT
TGCTGTAGAAGCTGTGCAACACAGGCCTCTCAGATCTCCTGCTGTTACCC
TGTGTCATGGAGATCCTGCAGCCTTGGATCTGTAGGACAGGTCCCTTCAC
ATGCTCCAGCAGTTCATAGATGGAGTAGATGTTGGGGTGAACCAACTCTG
AATGCTAGGTGGAAGCTGAGTTGGTCAACTCTCCAGCACTCCCTGTCCAC
ACCGCCAGGGCCAGCTCTACTGGACTCTGGTGAGGGACTTGGGGGAGGGG
AGCAATTCTCTGATTGGTGCCCATGACCTCCAGGCTAGCTCACTCCCCCA
CATTCCATCCCCACCCCACCCCCTGTCACCAAGGCCAGCTCTACTGTGCT
GCCCAGGTGAGGTTCATCTGCTCCCCCAACATGCTACAGCTGGCAAGAGG
CTCTCTCTCTCTCACACCCTCGAGGGCAAGTTCACTGCATGCAGGGAAGA
TCAGGTGATGAAGTACGTCCGGGGTCAAAAAACCCCTAATCCTAATAAAT
TTGGGGGCTCTGAACGACCCTATTTCCTGAATTTAN

Query= MSMg01no376_d11.b1 MSMg01no376_d11.b1 CHROMAT_FILE:
MSMg01no376_d11.b1 PHD_FILE: MSMg01no376_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:03 2005
         (543 letters)



>mm_chr6_37308553_37309495
          Length = 943

 Score =  839 bits (434), Expect = 0.0
 Identities = 449/454 (98%), Gaps = 1/454 (0%)
 Strand = Plus / Minus

                                                                       
Query: 90  gggtaaactctctgagaaaaacaagagtgggacattgagtgtagctcagttgatagagtg 149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 gggtaaactctctgagaaaaacaagagtgggacattgagtgtagctcagttgatagagtg 884

                                                                       
Query: 150 cttgcatgatgtgcaagaagcccttcatcccaccccccagtaccatagtaaaccccggca 209
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 883 cttgcatggtgtgcaagaagcccttcatccca-cccccagtaccatagtaaaccccggca 825

                                                                       
Query: 210 cggtggaacggctcaatctcagcatcgcagaggtgggggcaagaggaccagaagttcagg 269
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 824 cggtggaacggctcaatctcagcatggcagaggtgggggcaagaggaccagaagttcagg 765

                                                                       
Query: 270 gctatcctcagctaaccagaactcaaggccagactgggatgcatgagaacctgtctcaaa 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gctatcctcagctaaccagaactcaaggccagactgggatgcatgagaacctgtctcaaa 705

                                                                       
Query: 330 atatgtcacaaagataaaatgataaagaaactcaggaaaagatcttgtcagcaccgtgtc 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 atatgtcacaaagataaaatgataaagaaactcaggaaaagatcttgtcagcaccgtgtc 645

                                                                       
Query: 390 gggagtccctagcatcccaggccacccttggggtcatccttttgttggtgtctcatgcac 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gggagtccctagcatcccaggccacccttggggtcatccttttgttggtgtctcatgcac 585

                                                                       
Query: 450 atatctgcccagggtagttttgtgctgggactaggaagtatgagtgtgactatgctctct 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 atatctgcccagggtagttttgtgctgggactaggaagtatgagtgtgactatgctctct 525

                                             
Query: 510 ctctctgtctctctctctgtctctctctctctct 543
           |||||||||||||||||| ||||| |||||||||
Sbjct: 524 ctctctgtctctctctctctctctgtctctctct 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)