BAC Information

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BAC

Clone NameMSMg01-376D12
Chromosome6 (Build37)
Map Location 56,800,614 - 56,801,132
singlet/doubletsinglet
Overlap geneFkbp9
Upstream geneCcdc129, Gsbs, LOC100041357, Pde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2
Downstream geneNt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376D12.T7 (MSMg01no376_d12.b1)MSMg01-376D12.TJ (MSMg01no376_d12.g1)
ACCAG481588AG481589
length752735
length of high quality
(start - end)		527 (46 - 572)499 (74 - 572)
definitionCHROMAT_FILE: MSMg01no376_d12.b1 PHD_FILE: MSMg01no376_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:04 2005CHROMAT_FILE: MSMg01no376_d12.g1 PHD_FILE: MSMg01no376_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAAGACCTCGCTCAGATTCAGACCTATTTCAAGCCTCCCAGTTG
CCCTCGGACTATCCAAGTATCGGATTTTGTGAGGTACCACTACAACGGAA
CGTTCTTGGATGGGACACTGTTTGATTCCAGGTAAGTGCCACTGTTGGTG
GCAGTGTGTGAAATGCCTTTGGTTCCTTCTGTCGTGTGTTCTTTCTGTGC
TCATTAGGAGACCAGAAAATGTATTCTACCAAACTATACTTAGTACTAAA
TCCCTCCTCATATAATTTTGGTTGGTGTTTGATACTCTGTGGTGCCAGGG
TCAAACTATAACACCTTTAGAAGAAATTAAAAATTTCATTTAAATGACTA
AATGGTTAAACCATAGTTGCAGATCTCCACTTAAGTGAAGAGACATGTTT
CCAGGGAAACTCATGGGTGTTTGAGTCATTTATATGGTTTGTCTATGGAA
AGGGAAGGGGAGAACTATAGAGAGGCCTGAGGCTAGGGTAAAAAGTAGGG
AACTCTCTGAGATTTTCTGTAATGGCAGAGAACTCANTGAGTANGAGAGC
TGTTGACTGCCGGTATCCATAGGAACTTCTCATTTTCTTCTAAAAATGAG
ATATATGCCTGCCTGGGCCCCTAAAACCCTGGTTCCCAGGGATAACTGGG
GGCTTTGTGTTTTTTTGAAACTTGGAAAAAAAAATCCCCCGGAAGAGTTA
GG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATACTGGTTGGCGCCACTCCCGTGGCA
TTTTGGGGCAGATCTCAGTGGAGGGTCCCAAGATCCCCAAGGACTCTTCA
CTCCAAGGATATTGACATGACTGGTAACTGGAACATGACATCTGTTCCAA
CCGAACCACTCCCGCTTTCTGGTCCTGGTATTCCCCTGTATTGGGGCACA
TGATCTTCGCAAGACCAAGGGTCTCTCCTTCCATTGATGGCTGACTAGGC
CATCTTCTGCTTCATATGCAACTAGAGGCAGAGCTCTGGGGGCTACTCCT
TAGTTCATATTGTTGTTCCTCCTATAGGGTTGCAGACACCTTTAGCTCCT
TGCATACTTTCTCTAGCTCCTGCATTAGGGGCCTTGTGTTCCATCCAATA
GATGACTGTGAGCATCCACTTTTATATTTGCCAGGTACTGACATAGCCTC
ACAAGAGATAACTATATCAGGGTCCTATCCGCAAAATATTGCTGCCACAT
GCAATAGTGTCTGGGTTTGGTGGTTGTTTATGAGATGGATCCCCAGGTGG
GGAAGTCTCTAAATGTTCCGTCCTTCTGTTTCAGCTCTGAAGTTTGTCTT
TGAACTCCTTTCATGGGTCCTTTCTTTCCCCTTTTAAAAAGAAAAAAAAT
ATGCCCCCTTTGCTTTTCCCCCCTCCCGAGCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_d12.b1 MSMg01no376_d12.b1 CHROMAT_FILE:
MSMg01no376_d12.b1 PHD_FILE: MSMg01no376_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:04 2005
         (527 letters)



>mm_chr6_56800411_56801337
          Length = 927

 Score =  890 bits (460), Expect = 0.0
 Identities = 506/528 (95%), Gaps = 13/528 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgaagacctcgctcagattcagacctatttcaagcctcccagttgccctcgga 63
           |||||||||||||||  | ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgaagaccaggttcacattcagacctatttcaagcctcccagttgccctcgga 263

                                                                       
Query: 64  ctatccaagtatcggattttgtgaggtaccactacaacggaacgttcttggatgggacac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctatccaagtatcggattttgtgaggtaccactacaacggaacgttcttggatgggacac 323

                                                                       
Query: 124 tgtttgattccaggtaagtgccactgttggtggcagtgtgtgaaatgcctttggttcctt 183
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtttgattccaggtaggtgccactgttggtggcagtgtgtgaaatgcctttggttcctt 383

                                                                       
Query: 184 ctgtcgtgtgttctttctgtgctcattaggagaccagaaaatgtattctaccaaactata 243
           ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 384 ctgtcgtgtcttctttctgtgctcattaggaaaccagaaaatgtattctaccaaactata 443

                                                                       
Query: 244 cttagtactaaatccctcctcatataattttggttggtgtttgatactctgtggtgccag 303
           ||||||||||||||||||||||||||||||||       ||||||||||||  |||||||
Sbjct: 444 cttagtactaaatccctcctcatataattttg-------tttgatactctg--gtgccag 494

                                                                       
Query: 304 ggtcaaactataacacctttagaagaaattaaaaatttcatttaaatgactaaatggtta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ggtcaaactataacacctttagaagaaattaaaaatttcatttaaatgactaaatggtta 554

                                                                       
Query: 364 aaccatagttgcagatctccacttaagtgaagagacatgtttccagggaaactcatgggt 423
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aaccatagttgcagatctccatttaagtgaagagacatgtttccagggaaactcatgggt 614

                                                                       
Query: 424 gtttgagtcatttatatggtttgtctatggaaagggaaggggagaactatagagaggcct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gtttgagtcatttatatggtttgtctatggaaagggaaggggagaactatagagaggcct 674

                                                           
Query: 484 gaggctagggtaaaaagtagggaa----ctctctgagattttctgtaa 527
           ||||||||||||||||||||||||    ||||||||||||||| ||||
Sbjct: 675 gaggctagggtaaaaagtagggaaggaactctctgagattttccgtaa 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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