BAC Information

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BAC

Clone NameMSMg01-376F21
Chromosome6 (Build37)
Map Location 111,274,707 - 111,400,731
singlet/doubletdoublet
Overlap geneGrm7
Upstream genenone
Downstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376F21.T7 (MSMg01no376_f21.b1)MSMg01-376F21.TJ (MSMg01no376_f21.g1)
ACCAG481700AG481701
length768774
length of high quality
(start - end)		402 (48 - 449)408 (74 - 481)
definitionCHROMAT_FILE: MSMg01no376_f21.b1 PHD_FILE: MSMg01no376_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:15 2005CHROMAT_FILE: MSMg01no376_f21.g1 PHD_FILE: MSMg01no376_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,400,333 - 111,400,731)(111,274,707 - 111,275,114)
sequence
NTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAAGGAGGATAAGTAGTCTCTGGCACAAACAGGAATGCTTTTC
ACTGTTTTGTAGAGATCAGCCCTTTATTGAAGAGGGGAATCTTGGCAGTG
GTGTAGATATGGAGTGTTATCCCAGCAGGTAACAATATAGTGTGCCAAAA
GTCCTAAATCGAGAGCATGTCTAATATGTGAAGAATTCCCTTGTTCCATT
TTACAGATAGAATGGAACCATACATGACGATACGTACTTTTACATCCTCA
GGCTGTTGTTTAATGGAAAGGGCTCACTGAGACTACATGTCAACATATTA
GTACAGTTGATCTCAAAGGACACTCAGATTCTAAACTGCACAAGACTTGC
TTTTTCCCATAATCTTACAGTTGACTGTTAAGTTGAGTAGACTTGAGTGT
TTGCATTAAAATGACCTATAGGACCCAGTAGACTCCCATCAGCTCCATTC
TTCACAGAATCATTTCCCTGCCAGGGAGCCTTAAAAGACAAGCTATAATT
TTGGATACATATTGCTGCTTGAAAGTGAAAGGCCCTCCCCCGATCCCTTG
TTGAATAATTGGTTAGCCAGCCCGAAGAATTGTTTTGGAAAATTGGGGAA
ACTTTTTTTAATGGAACCCCAATGGAAAAAAAAGGGTCTGAAAGTTGGCC
CTGGGGTTAAAATTGGCCCCCCGGGGGGCCCCCCCCCCGCGCCGGAAGGG
GGGGGTTTTTAAAAAAAG

CGATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGGGTACACCTTTAAAAAGCAGTAA
ATCAACCCAAAAACCTGTAACCATGGTGAGTACTTGCCACAAGGGACAGA
AGACAAATGCAGGTCTGGGGACACTCTTGAATTAGCTTTAAATGAAAGGC
ATGGATTCATCCCCAGGCTTATACTGACCCAGTAAAGGCTGAGCTTCTGC
AGATACTGCTTGCACATAGATTTCCCCATCGCAGCAGAGCTTTACACTAC
TAAAAGCTACCTTGTGAATTGTACAACTGTATCAATATCAGAAGTTCTGA
TGGATTTACAGCCAGAGGGAATAAGTAATTGCCAGCTGTGCAGAAGGGAC
AGATGTGAGATATCATCCCAGTTCTAACCAGCATGCCTACAACTGGGGCT
GAAGGCATAGAGAAATGCTCTTGGCTCAGTGGGATCTGGCCTTACTCCCT
GACCTAGAAGATGAATGTTATTGACCTAATCACCTTCCATGAACCTCCAA
ATGTTCCAGTGGTCAGGCAATCCCTTATTATACCATCCTGAAGTGACATC
CATACCTGGGGATGCGGAAGAAACTCCAAAACCTATCCTCATGGGTCCCT
GGCCTTCTTGTTCCAAGGGTTAAAAGTAAAAACTTTTCCTCCCTAAACCT
TTTTTTTTCCCCAAATTTTTTTTTTTTTTGAAAACCCCTACGAGAAATTT
TTTTTTTTTGTTTTCCCCCCCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_f21.b1 MSMg01no376_f21.b1 CHROMAT_FILE:
MSMg01no376_f21.b1 PHD_FILE: MSMg01no376_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:15 2005
         (402 letters)



>mm_chr6_111400130_111400931
          Length = 802

 Score =  772 bits (399), Expect = 0.0
 Identities = 399/399 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaaggaggataagtagtctctggcacaaacaggaatgcttttcactgttttgt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ggaattcaaaggaggataagtagtctctggcacaaacaggaatgcttttcactgttttgt 543

                                                                       
Query: 64  agagatcagccctttattgaagaggggaatcttggcagtggtgtagatatggagtgttat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 agagatcagccctttattgaagaggggaatcttggcagtggtgtagatatggagtgttat 483

                                                                       
Query: 124 cccagcaggtaacaatatagtgtgccaaaagtcctaaatcgagagcatgtctaatatgtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cccagcaggtaacaatatagtgtgccaaaagtcctaaatcgagagcatgtctaatatgtg 423

                                                                       
Query: 184 aagaattcccttgttccattttacagatagaatggaaccatacatgacgatacgtacttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aagaattcccttgttccattttacagatagaatggaaccatacatgacgatacgtacttt 363

                                                                       
Query: 244 tacatcctcaggctgttgtttaatggaaagggctcactgagactacatgtcaacatatta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tacatcctcaggctgttgtttaatggaaagggctcactgagactacatgtcaacatatta 303

                                                                       
Query: 304 gtacagttgatctcaaaggacactcagattctaaactgcacaagacttgctttttcccat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtacagttgatctcaaaggacactcagattctaaactgcacaagacttgctttttcccat 243

                                                  
Query: 364 aatcttacagttgactgttaagttgagtagacttgagtg 402
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aatcttacagttgactgttaagttgagtagacttgagtg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no376_f21.g1 MSMg01no376_f21.g1 CHROMAT_FILE:
MSMg01no376_f21.g1 PHD_FILE: MSMg01no376_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:15 2005
         (408 letters)



>mm_chr6_111274507_111275314
          Length = 808

 Score =  789 bits (408), Expect = 0.0
 Identities = 408/408 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgggtacacctttaaaaagcagtaaatcaacccaaaaacctgtaaccatggtgagtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgggtacacctttaaaaagcagtaaatcaacccaaaaacctgtaaccatggtgagtac 260

                                                                       
Query: 61  ttgccacaagggacagaagacaaatgcaggtctggggacactcttgaattagctttaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgccacaagggacagaagacaaatgcaggtctggggacactcttgaattagctttaaat 320

                                                                       
Query: 121 gaaaggcatggattcatccccaggcttatactgacccagtaaaggctgagcttctgcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaggcatggattcatccccaggcttatactgacccagtaaaggctgagcttctgcaga 380

                                                                       
Query: 181 tactgcttgcacatagatttccccatcgcagcagagctttacactactaaaagctacctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactgcttgcacatagatttccccatcgcagcagagctttacactactaaaagctacctt 440

                                                                       
Query: 241 gtgaattgtacaactgtatcaatatcagaagttctgatggatttacagccagagggaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgaattgtacaactgtatcaatatcagaagttctgatggatttacagccagagggaata 500

                                                                       
Query: 301 agtaattgccagctgtgcagaagggacagatgtgagatatcatcccagttctaaccagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtaattgccagctgtgcagaagggacagatgtgagatatcatcccagttctaaccagca 560

                                                           
Query: 361 tgcctacaactggggctgaaggcatagagaaatgctcttggctcagtg 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcctacaactggggctgaaggcatagagaaatgctcttggctcagtg 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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