Query= MSMg01no376_h18.b1 MSMg01no376_h18.b1 CHROMAT_FILE:
MSMg01no376_h18.b1 PHD_FILE: MSMg01no376_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:23 2005
(499 letters)
>mm_chr6_129326618_129327513
Length = 896
Score = 770 bits (398), Expect = 0.0
Identities = 451/482 (93%), Gaps = 25/482 (5%)
Strand = Plus / Plus
Query: 20 aatttacccagtgcaaattacattagaacttatagattatttagaatttatagattattt 79
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aatttacccagtgcaaattacattagaacttatagattattt------------------ 279
Query: 80 ttatatttcctattttaataaaacaagaaaaataaagtcaaactatgttaaaa-gttgtg 138
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 280 ttatatttcctattttaataaaacaagaaaaataaagtcaaactatgtaaaaaagttgtg 339
Query: 139 ggattttactatgtaatgtgtaattatgcttgctttcatacatacttgagaagacaagat 198
| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 340 gaattttactatgtaatgtgtaattatgcttgctttcatacattcttgaga---caagat 396
Query: 199 aagtgtctgagacaggaaatgaatgatttactgatgtgatcaggtagttgggaaattgtg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aagtgtctgagacaggaaatgaatgatttactgatgtgatcaggtagttgggaaattgtg 456
Query: 259 tccaggtttttggctcaactttaatgatccttaaatgatgtctttgaaaattatgcaagc 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tccaggtttttggctcaactttaatgatccttaaatgatgtctttgaaaattatgcaagc 516
Query: 319 tcagtttaaatctttgttacaagtacagctttttt-caagtgatgcacatggtgatgcca 377
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 517 tcagtttaaatctttgttacaagtacagctttttttcaagtgatgcacatggtgatgcca 576
Query: 378 tgttactttattcaccagagatgagcctattaaacatcactatttgaatatatatcttgg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 577 tgttactttattcaccagagatgagcctattaaacatcactatttgaatatat--cttgg 634
Query: 438 aaatagagaccttattcaggacccacggaagtggctgcataagtctgatgtagtctctct 497
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 635 aaatagagaccttattcaggacccacagaagtggctgcataaacctgatgtagtctctct 694
Query: 498 aa 499
||
Sbjct: 695 aa 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 896
Length adjustment: 10
Effective length of query: 489
Effective length of database: 886
Effective search space: 433254
Effective search space used: 433254
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_h18.g1 MSMg01no376_h18.g1 CHROMAT_FILE:
MSMg01no376_h18.g1 PHD_FILE: MSMg01no376_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:23 2005
(548 letters)
>mm_chr6_129474000_129474947
Length = 948
Score = 971 bits (502), Expect = 0.0
Identities = 505/506 (99%)
Strand = Plus / Minus
Query: 43 aggccaggaagcaaagttcaattttgcttaggtatttggcaagtcattgcttggtggcac 102
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 948 aggccaggaagcaaagttcaattttgcttaggtatttggcaagtcattgcttggtgacac 889
Query: 103 ctataacaaaacaatactgaaaggaagcacaaaggattgccaaggttccaggaggcataa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 ctataacaaaacaatactgaaaggaagcacaaaggattgccaaggttccaggaggcataa 829
Query: 163 tttccttgaaactctttgcctcgtgagtgcttccaggcctttcggcctgtcaagcagact 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tttccttgaaactctttgcctcgtgagtgcttccaggcctttcggcctgtcaagcagact 769
Query: 223 tcactggaatgggcgtagcaatgatgtatcccaagaaattggaacttttcctagaacctc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tcactggaatgggcgtagcaatgatgtatcccaagaaattggaacttttcctagaacctc 709
Query: 283 atgataggagagcaaaaggccaaggaagcctagtgcctacctgaagaggaactggtctcc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 atgataggagagcaaaaggccaaggaagcctagtgcctacctgaagaggaactggtctcc 649
Query: 343 agttctgaaaacttatcagactaccccataagaaagataggagtccactgatgatgggta 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 agttctgaaaacttatcagactaccccataagaaagataggagtccactgatgatgggta 589
Query: 403 gattcctactgcttagccacatgtacctctggtcctttatttaaatctaaattcatgtta 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gattcctactgcttagccacatgtacctctggtcctttatttaaatctaaattcatgtta 529
Query: 463 caacatgaaagatagactttaggtggaaggaggggaaccttcttatcctattcccagtgt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 caacatgaaagatagactttaggtggaaggaggggaaccttcttatcctattcccagtgt 469
Query: 523 gttcacactgaacaaacctccctccc 548
||||||||||||||||||||||||||
Sbjct: 468 gttcacactgaacaaacctccctccc 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
