Query= MSMg01no376_l05.b1 MSMg01no376_l05.b1 CHROMAT_FILE:
MSMg01no376_l05.b1 PHD_FILE: MSMg01no376_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:39 2005
(554 letters)
>mm_chr6_87797128_87798081
Length = 954
Score = 1056 bits (546), Expect = 0.0
Identities = 549/550 (99%), Gaps = 1/550 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaggccaacctggtctagacttccaagacagagtgctacaaagagaatcctgtc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gaattcaaggccaacctggtctagacttccaagacagagtgctacaaagagaatcctgtc 694
Query: 65 tcggaaaaaaaaaaaaaaacaataataaacagaacaacaacaaatctgagaacaagtgac 124
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tcgg-aaaaaaaaaaaaaacaataataaacagaacaacaacaaatctgagaacaagtgac 635
Query: 125 ttacctattaaagccatacaggtagaacctcgtactgacaagatgtcaacagtttgcctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ttacctattaaagccatacaggtagaacctcgtactgacaagatgtcaacagtttgcctc 575
Query: 185 taaattcactaaggctagctaagtgataaaggagaatacacacatacatgctgcttctta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 taaattcactaaggctagctaagtgataaaggagaatacacacatacatgctgcttctta 515
Query: 245 tatgtaatttaaacctcaatgcagaaagtatctattcgtttagataaaccaaataaaaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tatgtaatttaaacctcaatgcagaaagtatctattcgtttagataaaccaaataaaaac 455
Query: 305 tacaataggtgagacactggaatcatttttaatttatttcttctaccttccccaactctt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tacaataggtgagacactggaatcatttttaatttatttcttctaccttccccaactctt 395
Query: 365 tttggaatagagtcatatgcagcctatgttgcacctgccactgagcccgataatactgcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttggaatagagtcatatgcagcctatgttgcacctgccactgagcccgataatactgcc 335
Query: 425 ttttacattttctttcttttaaggttgtgtgtgtgtctgtgtctgtctgtgcctatgtcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttttacattttctttcttttaaggttgtgtgtgtgtctgtgtctgtctgtgcctatgtcc 275
Query: 485 tagagatggaacccagggcttcaagaatgctaggccaacactatactaaactacagttcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tagagatggaacccagggcttcaagaatgctaggccaacactatactaaactacagttcc 215
Query: 545 agcccaatat 554
||||||||||
Sbjct: 214 agcccaatat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_l05.g1 MSMg01no376_l05.g1 CHROMAT_FILE:
MSMg01no376_l05.g1 PHD_FILE: MSMg01no376_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:39 2005
(510 letters)
>mm_chr6_87612250_87613159
Length = 910
Score = 774 bits (400), Expect = 0.0
Identities = 449/478 (93%), Gaps = 21/478 (4%)
Strand = Plus / Plus
Query: 1 tcagtgttcaaatacataaagcttatgctatgcttaacagtggctactcctagcagttgt 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tcagtgttcaaatacataaagcttatgctatgcttaacaatggctactcctagcagttgt 260
Query: 61 gtttggcagagtttcctctacttgcctttcccttctatgttcaatacaaaatacctagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 261 gtttggcagagtttcctctacttgcctttcccttctatgttcaatacaaaacacctaggt 320
Query: 121 gaccaagaccttagctgctataatcgtccattaaaaaccagaacacatggcaaccctcag 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaccaagatcttagctgctataatcgtccattaaaaaccagaacacatggcaaccctcag 380
Query: 181 ataacatcagaaaacaagacatccctccttatcccatgtctgacacatcaactaacagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 ataacatcagaaaacaagacatccctccttatcccatgtctgacacatcaactaatagag 440
Query: 241 tgtgtgaactgctgggatgggtaacctgaaaacaaatactgcgcttgtctaaaggaatac 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 tgtgtgaactgctgggatgggtaacctgaaaacaaatactgtgcttgtctaaaggaatac 500
Query: 301 agagattattagccctagaaatttagagttcccagtcaggaaaataaaataaaataaaat 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagattattaaccctagaaatttagagttcccagtcaggaaaataaaataaaataaaat 560
Query: 361 aaaataaaa---------------gacaaagtccatgcctgatgatgatgaagatgctgc 405
||||||||| |||||||||||||||| ||||||||| ||||
Sbjct: 561 aaaataaaataaaataaaataaaagacaaagtccatgcctaatgatgatg------ctgc 614
Query: 406 cttaaggccctgagcacacggctatgctaccacactatgcatgcacctcctctccatc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cttaaggccctgagcacacggctatgctaccacactatgcatgcacctcctctccatc 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
