BAC Information

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BAC

Clone NameMSMg01-376L10
Chromosome6 (Build37)
Map Location 107,534,838 - 107,535,358
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1, Lrrn1
Downstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376L10.T7 (MSMg01no376_l10.b1)MSMg01-376L10.TJ (MSMg01no376_l10.g1)
ACCAG481966AG481967
length753737
length of high quality
(start - end)		525 (46 - 570)543 (72 - 614)
definitionCHROMAT_FILE: MSMg01no376_l10.b1 PHD_FILE: MSMg01no376_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:40 2005CHROMAT_FILE: MSMg01no376_l10.g1 PHD_FILE: MSMg01no376_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGGTGTCTTGTGAAGAGAAACCTGTCCTAAGGTTGTCATCACAA
ACCATGTCTAGAAGATTACATTATCGCTGAAATGCCCAAAAGACGTTAGA
AAAACCAGAAATGAATGTTCTAGAGGGATTGAAGATTGCTTTGCACAATA
CTCAATGTTATGGGTTGGGGTCAAGAAAAGTGGTGATGTAGCAAGGCCTT
CAGAAATAATGCACAAGACATCAGTTTCTTGATGACAAAACTCTGCTCTG
GGAACAGGCATCCTTGGCTTCCCAATGGATATATAGACAGAGAGAAGGTG
ACATAACGTCAGGGTCGTTTTACTTGTTTTATAATGACAGGGTAGCCTCA
TGGAGGTAAACAGGACAATGTTTTAAACGACTTACACTAGTTACATTTTC
AACTTTTTCATAATTAAACACAAAAGGTTTTAAGAACAGTAGACCATTCT
CAATAATTCTCAGGTACTTTATGTAGGTTCTACATAGGTTCTGTTGAAAA
GTCTGTCTATCTCTTCTCTAGAAAAATAATGTATGGACATAGTATTTCTT
TGTTTTTAAACACTCCTGGATATTTCCTAAAACAAAGAAAATTCTTTACT
CNCCCCAACAGATTTTCTAAATCCAGACCATATGGATCAAATGTTTTCTA
ATCACTGGCGGGTATTTAAATTTTCCGATTATCTAGCAAAATTCTTTACT
AAG

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAG
TCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGA
TATTAGCCCCAAACCTAAGATACCCCAGATATAAGATACAATTTTCCTAA
ACCCTGAAACTCAAGAAAAATGAAGACTGAAGTGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_l10.b1 MSMg01no376_l10.b1 CHROMAT_FILE:
MSMg01no376_l10.b1 PHD_FILE: MSMg01no376_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:40 2005
         (525 letters)



>mm_chr6_107534634_107535558
          Length = 925

 Score = 1000 bits (517), Expect = 0.0
 Identities = 520/521 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatggtgtcttgtgaagagaaacctgtcctaaggttgtcatcacaaaccatgtct 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatggtgtcatgtgaagagaaacctgtcctaaggttgtcatcacaaaccatgtct 264

                                                                       
Query: 65  agaagattacattatcgctgaaatgcccaaaagacgttagaaaaaccagaaatgaatgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaagattacattatcgctgaaatgcccaaaagacgttagaaaaaccagaaatgaatgtt 324

                                                                       
Query: 125 ctagagggattgaagattgctttgcacaatactcaatgttatgggttggggtcaagaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctagagggattgaagattgctttgcacaatactcaatgttatgggttggggtcaagaaaa 384

                                                                       
Query: 185 gtggtgatgtagcaaggccttcagaaataatgcacaagacatcagtttcttgatgacaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtggtgatgtagcaaggccttcagaaataatgcacaagacatcagtttcttgatgacaaa 444

                                                                       
Query: 245 actctgctctgggaacaggcatccttggcttcccaatggatatatagacagagagaaggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actctgctctgggaacaggcatccttggcttcccaatggatatatagacagagagaaggt 504

                                                                       
Query: 305 gacataacgtcagggtcgttttacttgttttataatgacagggtagcctcatggaggtaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacataacgtcagggtcgttttacttgttttataatgacagggtagcctcatggaggtaa 564

                                                                       
Query: 365 acaggacaatgttttaaacgacttacactagttacattttcaactttttcataattaaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acaggacaatgttttaaacgacttacactagttacattttcaactttttcataattaaac 624

                                                                       
Query: 425 acaaaaggttttaagaacagtagaccattctcaataattctcaggtactttatgtaggtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acaaaaggttttaagaacagtagaccattctcaataattctcaggtactttatgtaggtt 684

                                                    
Query: 485 ctacataggttctgttgaaaagtctgtctatctcttctcta 525
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctacataggttctgttgaaaagtctgtctatctcttctcta 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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