BAC Information

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BAC

Clone NameMSMg01-376L17
Chromosome6 (Build37)
Map Location 12,860,781 - 12,861,225
singlet/doubletsinglet
Overlap genenone
Upstream genePhf14, LOC100040844, EG625347, LOC435879, Thsd7a, LOC667735
Downstream geneLOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376L17.T7 (MSMg01no376_l17.b1)MSMg01-376L17.TJ (MSMg01no376_l17.g1)
ACCAG481979AG481980
length775540
length of high quality
(start - end)		449 (47 - 495)131 (126 - 256)
definitionCHROMAT_FILE: MSMg01no376_l17.b1 PHD_FILE: MSMg01no376_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:42 2005CHROMAT_FILE: MSMg01no376_l17.g1 PHD_FILE: MSMg01no376_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCAATCTTTGCGATAGTTTATTTTAATTTTGAAAATAATACAG
AAGCACCCATTGATATTCTATGCAAATGCAAGTATTGTCAAAACTGAATA
GACTTTTAAATTTTTTTCAAGGTATCCACCAAATACTAACTTTTCCTGAA
TTTTTACAAGAGCAAACTTCAGGTTATCCACTGTGACTTTTTCACAAGTC
TTTTGTCTATGTAAATATTTACATTGTTCTATGTGACATGTATCTGAACC
TTAGTTTTCCTGAATTTTTACAAGAGCAAATTTCACGTTATCCACTGTGA
CTTTTTCACAAGTCTTTTGTCTATGTGTGACATGTATCCGAACCTTAGTT
TTCCAGAATGTTTTTATAGTTTCCCAATCACAGTACTCTATGCCTTCTGC
TTTCTTCCTCTGGCTTGTCTGAAGCTTGCTATTCCAAGCTTTGAATCCAT
CACCAATATCTGCTGTCAAAGTTTTGTAACTTTCACTCCTCCCTAACACT
TAAACTTTTTTCTGTCCCATTTTCTTTAATGTGTTTATTTCCCGGAACTC
GTAACTTTCCCATGTCTCTGCCTGGAACCTATCATTGAAAAATACCCAAC
CCCTTACCGAACTTTTAAAAAAGGCTTCTTTGTTTCCAACTGGGGGTGGG
AGAGCCTATCTTTCTTTCTTTAAAAGCCCGGGAAAAAAAAAAGAGAAATT
TAAAATTCTTTGGATAAAAAAACCC

NCCCCNAATTTTNNCNCTCTTTNCTCCNCNCNNNNNNNNNNNNNNNNNNN
GGCCATTATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTT
TTAATGGGGTTGTTTGATTTTCTGAAGTCCACCNTTCTTGAGTTCTTTAT
ATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTT
TTCCCATCTGTTGNTGGTCTCTTTGTCTTATTGACGGNGTCTTTTGCCTT
GCAGAAACTTTGGAAGTTTCTTTAGTCCCCTTTTGGGCCAATTTCCCCGA
ATTTTTTACAGGGAACAAAAGGCCCCCTTTGGGCGGGTCTCCTGGTTTCC
CAAAGAAAAATTTTTTTTTTTTCCCCCCCGGGGGGGGGGGCCCCCNNANN
ATTATAACTTAATTCTTTTTTCCTCTTTTTNNTNNGAGAGGGTTTTTTTT
TCCCCCCTTTTTTTTTTCCCCCCTAAAAAAAAAAATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_l17.b1 MSMg01no376_l17.b1 CHROMAT_FILE:
MSMg01no376_l17.b1 PHD_FILE: MSMg01no376_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:42 2005
         (449 letters)



>mm_chr6_12860577_12861425
          Length = 849

 Score =  845 bits (437), Expect = 0.0
 Identities = 443/445 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcaatctttgcgatagtttattttaattttgaaaataatacagaagcacccat 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gaattcttcaatctttgggatagtttattttaattttgaaaataatacagaagcacccat 590

                                                                       
Query: 65  tgatattctatgcaaatgcaagtattgtcaaaactgaatagacttttaaatttttttcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tgatattctatgcaaatgcaagtattgtcaaaactgaatagacttttaaatttttttcaa 530

                                                                       
Query: 125 ggtatccaccaaatactaacttttcctgaatttttacaagagcaaacttcaggttatcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ggtatccaccaaatactaacttttcctgaatttttacaagagcaaacttcaggttatcca 470

                                                                       
Query: 185 ctgtgactttttcacaagtcttttgtctatgtaaatatttacattgttctatgtgacatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ctgtgactttttcacaagtcttttgtctatgtaaatatttacattgttctatgtgacatg 410

                                                                       
Query: 245 tatctgaaccttagttttcctgaatttttacaagagcaaatttcacgttatccactgtga 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 409 tatctgaaccttagttttcctgaatttttataagagcaaatttcacgttatccactgtga 350

                                                                       
Query: 305 ctttttcacaagtcttttgtctatgtgtgacatgtatccgaaccttagttttccagaatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctttttcacaagtcttttgtctatgtgtgacatgtatccgaaccttagttttccagaatg 290

                                                                       
Query: 365 tttttatagtttcccaatcacagtactctatgccttctgctttcttcctctggcttgtct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tttttatagtttcccaatcacagtactctatgccttctgctttcttcctctggcttgtct 230

                                    
Query: 425 gaagcttgctattccaagctttgaa 449
           |||||||||||||||||||||||||
Sbjct: 229 gaagcttgctattccaagctttgaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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