BAC Information

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BAC

Clone NameMSMg01-376P04
Chromosome6 (Build37)
Map Location 129,632,996 - 129,633,465
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1
Downstream geneLOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376P04.T7 (MSMg01no376_p04.b1)MSMg01-376P04.TJ (MSMg01no376_p04.g1)
ACCAG482144AG482145
length744744
length of high quality
(start - end)		596 (44 - 639)469 (74 - 542)
definitionCHROMAT_FILE: MSMg01no376_p04.b1 PHD_FILE: MSMg01no376_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:58 2005CHROMAT_FILE: MSMg01no376_p04.g1 PHD_FILE: MSMg01no376_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAAATGAGGAATACTGAATGGCTGAGAAGCACCTACAATAGTGTTC
ATCATCCTTATTATCAGCGAAATGCAAATAAAAACAACCCTGAGATTCCA
CCTCACAACAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGAT
GCTGGCAAGGATTTGGAGAAAGAGGAACACTCTTCCATTACTGGTGGGAT
TGCAAGCTTGGACAACCACTCTGTAAATCAGTCTGGCATTTCCTCAGAAA
ATTAGACATAATACTACCGGAAGATCCAGTAATACCAGTCCTGGTCATAT
ACCCAGAAGATGCTCCAACTTGTAATAAGGATATATAATACACTATGTTC
ATAGAAGCCTTTTTTATAATATCCAGAAGTTGGAAAGAACACAGATGTCC
CTCAAAAGAAGAGAAAGCAGATACATAAAATGTGATACATTTATACAATG
GAAGACTACTCAACTATTAAAAGCAATGAATTTATGAAATTCTTGGAAAA
TTGGATGGATCTGAAGGATATTCTGAGCAAGGTAAACCAATCACAAAAGA
ACACACATGATATGCACTCACTGATAACTGGATTTGTGCCTTACAAATAC
AGAAGTGGATGCTCACAGCCATCCATTGGACAGAGCACAGGGTCCCAAAT
GAAGAAGCTAGAGAGAGTACCTAGGTTCCTGAGAAAGTTGCAAA

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTAGTCAAGTAAAGAAGGAGCAAATA
TTTATAAAATATGAGAATGGCGTTGAGCCATTAACTCTCTGCTGGTACAG
AATTAACAAATGAATATACAGAGACACACCTTTGCACACTGTGCCCCAAC
ACCTACTAGTAAGGGATTTTGTTAATTGGGCTAATTGGGATAGAAAGTGA
GTGTGAGGGGGGTGGGTCTTGGATTGAATGAAAAGAGGAAAACTACTGAC
CACCATTATGTGTGCATTAATTCATTGCTTCTTTTCTTGAGTGTGAAATA
ATGTGATTAGGCACTTCAATTTCCTTCTGTGTTGAATTTGCAATGATGAA
TTGTAACCTGGCATTATGAACCAATAGGCCCTTCTCCTTTAAATAGATTT
TGTCGGGGTATTTTATCACAACAACAGAAATGAAAATAAGATTGGTAGTT
AAACCATTATACACATTCCTGCATCTAGTCCATCTAACTATAACAAACTG
AACTGTGGGTAAATCGTTTCTCAACCAACCTCTGCTTATTCTATGATAGG
CAGCACCACAGACTGCTCCAGGGGCGAACAAAGGTAAGAGAAGTGGTACG
CCCTCCCTTCTAACTGCAAATAGAACAATCTGGCCCCTTACCCTGTTTCG
ATGGGCCCTACCCTGGTACCTGCTGAACCTTTACCGCTTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_p04.g1 MSMg01no376_p04.g1 CHROMAT_FILE:
MSMg01no376_p04.g1 PHD_FILE: MSMg01no376_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:58 2005
         (469 letters)



>mm_chr6_129632796_129633665
          Length = 870

 Score =  893 bits (462), Expect = 0.0
 Identities = 468/470 (99%), Gaps = 1/470 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttagtcaagtaaagaaggagcaaatatttataaaatatgagaatggcgttgagccatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cttagtcaagtaaagaaggagcaaatatttataaaatatgagaatggcgatgagccatta 260

                                                                       
Query: 61  actctctgctggtacagaattaacaaatgaatatacaga-gacacacctttgcacactgt 119
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 actctctgctggtacagaattaacaaatgaatatacagaagacacacctttgcacactgt 320

                                                                       
Query: 120 gccccaacacctactagtaagggattttgttaattgggctaattgggatagaaagtgagt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccccaacacctactagtaagggattttgttaattgggctaattgggatagaaagtgagt 380

                                                                       
Query: 180 gtgaggggggtgggtcttggattgaatgaaaagaggaaaactactgaccaccattatgtg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgaggggggtgggtcttggattgaatgaaaagaggaaaactactgaccaccattatgtg 440

                                                                       
Query: 240 tgcattaattcattgcttcttttcttgagtgtgaaataatgtgattaggcacttcaattt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcattaattcattgcttcttttcttgagtgtgaaataatgtgattaggcacttcaattt 500

                                                                       
Query: 300 ccttctgtgttgaatttgcaatgatgaattgtaacctggcattatgaaccaataggccct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttctgtgttgaatttgcaatgatgaattgtaacctggcattatgaaccaataggccct 560

                                                                       
Query: 360 tctcctttaaatagattttgtcggggtattttatcacaacaacagaaatgaaaataagat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctcctttaaatagattttgtcggggtattttatcacaacaacagaaatgaaaataagat 620

                                                             
Query: 420 tggtagttaaaccattatacacattcctgcatctagtccatctaactata 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggtagttaaaccattatacacattcctgcatctagtccatctaactata 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 870
Length adjustment: 10
Effective length of query: 459
Effective length of database: 860
Effective search space:   394740
Effective search space used:   394740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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