Query= MSMg01no377_d04.b1 MSMg01no377_d04.b1 CHROMAT_FILE:
MSMg01no377_d04.b1 PHD_FILE: MSMg01no377_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:18 2005
(484 letters)
>mm_chr6_112038062_112038945
Length = 884
Score = 775 bits (401), Expect = 0.0
Identities = 473/527 (89%), Gaps = 47/527 (8%)
Strand = Plus / Plus
Query: 5 gaattccaaagttcaattgattctattctgcaaagtagttacttagatttgtggctgcac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gaattccaaagttcaattgattctattctgcaaagtagttacttagatttgtggctgcac 253
Query: 65 taccaagaaattgaaaatctggattcttgactcagatagcctgtcttaacagctctgaac 124
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 254 taccaagaaattgaatatctggattcttgactcagatagcctgtcttaacagttctgaac 313
Query: 125 ccgagctttgggggaagatatttcttcttccctgtacatctctatctatttgctatatgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ccgagctttgggggaagatatttcttcttccctgtacatctctatctatttgctatatgc 373
Query: 185 atggcctctgagaggcatgccatgatata-----------tatataattaggtgtatata 233
||||||||||||||||| ||||||||||| ||||||||||||| ||||||
Sbjct: 374 atggcctctgagaggcacgccatgatataaattatttatatatataattaggtatatata 433
Query: 234 tttaaaaagggaaggaaaataaacatagagttagctatgataactcaataatacatggta 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 434 tttaaaaagggaaggaaaataaacatagagttagctatgataactcaataatacatagta 493
Query: 294 agggaacagatttgaagcattctccctagtttaaagaaaaattttaaaaatgcatatata 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agggaacagatttgaagcattctccctagtttaaagaaaaattttaaaaatgcatatata 553
Query: 354 tgtatatatatatat------------------------------------tcacggaat 377
| ||||||||||||| |||||||||
Sbjct: 554 tatatatatatatatatatatatatatatatatatatatatatatatatattcacggaat 613
Query: 378 tataaataaggataatttgggctggggagatggctgaatggacaaaaagcttattttaca 437
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 614 tataaataaggataatttgggctgaggagatggctgaatggacaaaaagcttattttaca 673
Query: 438 agcatgaggcccctgaattcaaatcaacactacactcataaaaagct 484
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 agcatgaggcccctgaattcaaatcaacactacactcataaaaagct 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_d04.g1 MSMg01no377_d04.g1 CHROMAT_FILE:
MSMg01no377_d04.g1 PHD_FILE: MSMg01no377_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:18 2005
(409 letters)
>mm_chr6_112216092_112216900
Length = 809
Score = 590 bits (305), Expect = e-173
Identities = 305/305 (100%)
Strand = Plus / Minus
Query: 1 agatccacacacttgtgtggcaagaactgcccactgagatatcttccaagcctctggttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agatccacacacttgtgtggcaagaactgcccactgagatatcttccaagcctctggttt 246
Query: 61 gttttaactttttgatatatggaagtaattgtctggatttacatctttgaatttttatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gttttaactttttgatatatggaagtaattgtctggatttacatctttgaatttttatct 186
Query: 121 tttctaagggtctcagcctatggttcagttgtttctggtgatgctggtcaggaacccaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tttctaagggtctcagcctatggttcagttgtttctggtgatgctggtcaggaacccaca 126
Query: 181 gctcttggccagccacgtaacctcaggagtaagcgaatacctgatactctaaagtgtctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gctcttggccagccacgtaacctcaggagtaagcgaatacctgatactctaaagtgtctg 66
Query: 241 ttgtcaaactaggacgtttgcttaggacattcaatgcattttggacttaagatatcttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 ttgtcaaactaggacgtttgcttaggacattcaatgcattttggacttaagatatcttca 6
Query: 301 gttta 305
|||||
Sbjct: 5 gttta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
