Query= MSMg01no377_i19.b1 MSMg01no377_i19.b1 CHROMAT_FILE:
MSMg01no377_i19.b1 PHD_FILE: MSMg01no377_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:46 2005
(559 letters)
>mm_chr6_75751334_75752295
Length = 962
Score = 1021 bits (528), Expect = 0.0
Identities = 550/558 (98%), Gaps = 3/558 (0%)
Strand = Plus / Minus
Query: 5 gaattctgtttgtagctcccatgtttattgactcacaaatttcagtaacttagttccaat 64
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 762 gaattctgtttgtagttcccatgttgattgactcacaaatttcagtaacttagttccaat 703
Query: 65 tcatttgatgctttctcctggactctgtgataacctaaactgtcaggtacaccaatgcaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tcatttgatgctttctcctggactctgtgataacctaaactgtcaggtacaccaatgcaa 643
Query: 125 aaactaaaaggaagataatatt--aaaaaaaaaaagaaatagaaggtaagcaaatccagt 182
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 642 aaactaaaaggaagataatattaaaaaaaaaaaaagaaatagaaggtaagcaaatccagt 583
Query: 183 aggaaagataaacttggagataaaatcagaggtaagagatcaaatagtctcagtcattca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aggaaagataaacttggagataaaatcagaggtaagagatcaaatagtctcagtcattca 523
Query: 243 aattctgttagcttatcagagttgtaaatatatatgtacaatgttatacaatagacagta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aattctgttagcttatcagagttgtaaatatatatgtacaatgttatacaatagacagta 463
Query: 303 gttacatttatatcttaagacttatgggaaataaaagatagagaataattgctgaataac 362
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gttgcatttatatcttaagacttatgggaaataaaagatagagaataattgctgaataac 403
Query: 363 tagatcagagaggtagtattaaactgagatttaaaacatgcgtgg-tttatgccaaattt 421
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 402 tagatcagagaggtagtattaaactgagatttaaaacatgcgtggttttatgccaaattt 343
Query: 422 tttaatttaagccaaattaagatgagatataggagggcataggtatgtgaaggatacaga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tttaatttaagccaaattaagatgagatataggagggcataggtatgtgaaggatacaga 283
Query: 482 taggatatatacttcatgtatgtcctaatacttgagtaaaacctgaaggtggaataaagt 541
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 282 taggatatatacttcatgtatgtcctaatacttgagtaaaacctgaaggtagaataaagt 223
Query: 542 cacacaagacagcatctg 559
||||||||||||| ||||
Sbjct: 222 cacacaagacagcgtctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 962
Length adjustment: 10
Effective length of query: 549
Effective length of database: 952
Effective search space: 522648
Effective search space used: 522648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_i19.g1 MSMg01no377_i19.g1 CHROMAT_FILE:
MSMg01no377_i19.g1 PHD_FILE: MSMg01no377_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:46 2005
(460 letters)
>mm_chr6_75736616_75737471
Length = 856
Score = 824 bits (426), Expect = 0.0
Identities = 450/460 (97%), Gaps = 4/460 (0%)
Strand = Plus / Plus
Query: 1 tctgatatagctctcatattctttgaatagtattgaaaggaacatgtttcttgtagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tctgatatagctctcatattctttgaatagtattgaaaggaacatgtttctcgtagtgtt 260
Query: 61 cttgacttgagtgcaatggaaagctatttatttctggaggaaactaaagaagcacatatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgacttgagtgcaatggaaagctatttatttctggaggaaactaaagaagcacatatg 320
Query: 121 gtactcacagtagtttatttcaagggtcaaatcaaatagaaagataaatctcacagacag 180
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtac----agtagtttatttcaagggtcaaatcaaatagaaagataaatctcacagacag 376
Query: 181 aagacatgagcataatatttttaggttaagtgtcgttataagataaactttcttggcatt 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 377 aagacatgagcataatatttttaggttaaatgtcgttataagataaactttcttggcatt 436
Query: 241 tggattatggaatattttcattacatggaacagagtactttaatgaaagagctgagtcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tggattatggaatattttcattacatggaacagagtactttaatgaaagagctgagtcaa 496
Query: 301 agcatacatttaatatatttttcacctcgagtttatgccatagtctgcaggtagttttat 360
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 497 agtatacatttaatatatttttcagctcgagtttatgccatagtctgcaggtagttttat 556
Query: 361 ccaatgtttcagtgcacctgcattctgattgtaactcattacataaggtcaggagtagaa 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccaatgcttcagtgcacctgcattctgattgtaactcattacataaggtcaggagtagaa 616
Query: 421 tttactcttctgctgacatgtgggcaaccaaagaatctga 460
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 617 tttactcttctgctgacatgtgggcaaccaaagaacctga 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 856
Length adjustment: 10
Effective length of query: 450
Effective length of database: 846
Effective search space: 380700
Effective search space used: 380700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
