BAC Information

Click to search

BAC

Clone NameMSMg01-377K14
Chromosome6 (Build37)
Map Location 55,819,904 - 55,883,227
singlet/doubletdoublet
Overlap geneCcdc129
Upstream geneZnrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339
Downstream geneGsbs, LOC100041357, Pde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377K14.T7 (MSMg01no377_k14.b1)MSMg01-377K14.TJ (MSMg01no377_k14.g1)
ACCAG482690AG482691
length761755
length of high quality
(start - end)		569 (50 - 618)417 (79 - 495)
definitionCHROMAT_FILE: MSMg01no377_k14.b1 PHD_FILE: MSMg01no377_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:55 2005CHROMAT_FILE: MSMg01no377_k14.g1 PHD_FILE: MSMg01no377_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,882,782 - 55,883,227)(55,819,904 - 55,820,320)
sequence
NNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTCCCTCTCGGTCTAGCCTTTAACATTTCTGTCACTTCCCC
AAAGCACACTGGAAACAAGCCTTTGCTATGTGGGCATTTGGGGTCATTCC
ATATCCAAACGTTTACTGATTCTTTTTAAACCTATGTTTGATGGTAAAAT
TGCTCAGAGGTGTCACCAGAGGTCTGTACATGTAGACAAACTCATCAATA
TGAGTACAGAAATGTATTTATATTAGGTTATGCTATATAGCTTTATGAGA
TTTACCTCAGGAAGGCAAGAATACTTTTACATCAGAAAATTACTCAATAT
ATTATACAATAAATGAAAGAATCATGTTTATGGCTATATCAAACAATTAC
AAAGAAATTATTAGGCAAAATACAATAATCCTTAATGATAGAAAACACTC
AAATTACAAATAAGCTGACTTTTATCTGAAAAGGGGCATCTATAAAAAGA
ATATAGTATATATTGTACTTAATGTTAAAAGAGTGAATGCTTACTTCCAA
AGATTAGCAGCACAAGATATCCACTCTCTGTTCTTTTATTTCTAGGACAA
TTTAATCAATCAATCAATCAATCAATCAATCGGTCAATCCAGAATATATG
AAGAAATAACATTAGATTTGCACGTGGCCCATACGTATGTTCTATGTAGA
CATATAACATACCACATTTGGCTCCCATTTTCTGGACCATCTTTTTTTCT
GTTGTAAAGAC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCAAAGTTCAGAACGCAGCA
GAGCTGAGAACAGTCAAGGGATCTGACCTGCCAGATTTGCTATTTTAATC
ACATAAGAACCAAGGATGTTGTTGGCTGAAATGGGAACCTGCTACCAAAC
CTGATGACTTGCATTCAATCCTCAGACCTCGGGTGGTGGAAGGGGAGAGT
AGACCTCTGAATTCTATAGCTTCTCCATACTTGTGCCCACTTGAAAAATA
AAGGAATAAATGTGAAAGAAACACTAAACGAAAAACAAAACAGCCAACAA
AAGTGCTGCCCAAACTACCTGGAGTTTCCTTTCCCATGACCATTTGGCCT
GGTCCATGTGCTACGCTGGAGCCTGATGTGCCATAGCACACTCTCGGAGG
TGTAATGATTGTCACTTTGTTGGGATTTTTACATTTCCTGACTCTGTTAT
GCAATTAAAACATAAGGATAGATGGGTTGAAGTTGCTTTNACTATCCAAA
TTCTCTTTTTAATTTTTGTGTTATGCGGCACTCCACGCTTTCTCCTTTGC
ATTCGCTACCCCATTTCAACATTATGTATCCCCCTCCCCCTCTTTTTTCC
TTTTCCTCTTCTTTATCGCCTCTTTTTACTCCTCCGTTCCCCTTATTTTC
CTTCATATATCCACACATATCTTATCTCTTTTGCCGCTTAACCAACCCTC
TTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_k14.b1 MSMg01no377_k14.b1 CHROMAT_FILE:
MSMg01no377_k14.b1 PHD_FILE: MSMg01no377_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:55 2005
         (569 letters)



>mm_chr6_55882782_55883750
          Length = 969

 Score =  839 bits (434), Expect = 0.0
 Identities = 443/446 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttccctctcggtctagcctttaacatttctgtcacttccccaaagcacactgga 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gaattcttcccactaggtctagcctttaacatttctgtcacttccccaaagcacactgga 387

                                                                       
Query: 65  aacaagcctttgctatgtgggcatttggggtcattccatatccaaacgtttactgattct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aacaagcctttgctatgtgggcatttggggtcattccatatccaaacgtttactgattct 327

                                                                       
Query: 125 ttttaaacctatgtttgatggtaaaattgctcagaggtgtcaccagaggtctgtacatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttttaaacctatgtttgatggtaaaattgctcagaggtgtcaccagaggtctgtacatgt 267

                                                                       
Query: 185 agacaaactcatcaatatgagtacagaaatgtatttatattaggttatgctatatagctt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 266 agacaaactcatcaatatgagtacagaaatgtatttatattaggttatgctatacagctt 207

                                                                       
Query: 245 tatgagatttacctcaggaaggcaagaatacttttacatcagaaaattactcaatatatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tatgagatttacctcaggaaggcaagaatacttttacatcagaaaattactcaatatatt 147

                                                                       
Query: 305 atacaataaatgaaagaatcatgtttatggctatatcaaacaattacaaagaaattatta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 atacaataaatgaaagaatcatgtttatggctatatcaaacaattacaaagaaattatta 87

                                                                       
Query: 365 ggcaaaatacaataatccttaatgatagaaaacactcaaattacaaataagctgactttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  ggcaaaatacaataatccttaatgatagaaaacactcaaattacaaataagctgactttt 27

                                     
Query: 425 atctgaaaaggggcatctataaaaag 450
           ||||||||||||||||||||||||||
Sbjct: 26  atctgaaaaggggcatctataaaaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no377_k14.g1 MSMg01no377_k14.g1 CHROMAT_FILE:
MSMg01no377_k14.g1 PHD_FILE: MSMg01no377_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:55 2005
         (417 letters)



>mm_chr6_55819704_55820520
          Length = 817

 Score =  768 bits (397), Expect = 0.0
 Identities = 412/417 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcaaagttcagaacgcagcagagctgagaacagtcaagggatctgacctgccagattt 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 cttcaaagttcagaacgcagcagagctgagaagagtcaagggatctgacctgccagattt 260

                                                                       
Query: 61  gctattttaatcacataagaaccaaggatgttgttggctgaaatgggaacctgctaccaa 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 gctattttaatcacataagaaccaaggatgttgttggctgaaatggaaacctgctaccaa 320

                                                                       
Query: 121 acctgatgacttgcattcaatcctcagacctcgggtggtggaaggggagagtagacctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctgatgacttgcattcaatcctcagacctcgggtggtggaaggggagagtagacctct 380

                                                                       
Query: 181 gaattctatagcttctccatacttgtgcccacttgaaaaataaaggaataaatgtgaaag 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 gaattctatagcttctccatacttgtgcccacttgaaaattaaaggaataaatgtgaaag 440

                                                                       
Query: 241 aaacactaaacgaaaaacaaaacagccaacaaaagtgctgcccaaactacctggagtttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacactaaacgaaaaacaaaacagccaacaaaagtgctgcccaaactacctggagtttc 500

                                                                       
Query: 301 ctttcccatgaccatttggcctggtccatgtgctacgctggagcctgatgtgccatagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 ctttcccatgaccatttggcctggtccatgtgctacgctggagcctgatgtgccatacca 560

                                                                    
Query: 361 cactctcggaggtgtaatgattgtcactttgttgggatttttacatttcctgactct 417
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cactcttggaggtgtaatgattgtcactttgttgggatttttacatttcctgactct 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |