BAC Information

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BAC

Clone NameMSMg01-377L04
Chromosome6 (Build37)
Map Location 58,553,187 - 58,553,710
singlet/doubletsinglet
Overlap geneAbcg2
Upstream geneHerc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954
Downstream geneHerc3, Nap1l5, D430015B01Rik, Tigd2, Gprin3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377L04.T7 (MSMg01no377_l04.b1)MSMg01-377L04.TJ (MSMg01no377_l04.g1)
ACCAG482718AG482719
length757759
length of high quality
(start - end)
518 (50 - 567)496 (80 - 575)
definitionCHROMAT_FILE: MSMg01no377_l04.b1 PHD_FILE: MSMg01no377_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:58 2005CHROMAT_FILE: MSMg01no377_l04.g1 PHD_FILE: MSMg01no377_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:58 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTGACATTGAATTTAAAATCAGATGAGTCATTATTTTTTAT
GTTTTCCCCAGTTTCATGCAGGATGGAAAAAAAATAGAGAAGTTAGAGTT
AGTGGGTTTTGTCTAGAGTCTGCCTAGGTAAAAGAGGGAGTTTAGGTGCT
CTCAGAGGTGTGAATACAACAAAAGATTGTGGACTTTCAGCAGGCGTGGG
AACATGAGAACTAAAGAAGACCACACAGGATGCAGCACAGTGAGGGAGTG
GTGTGCAGCTTCTTGAGGGGTCTCGAGGAAGAATTGGGTTACTAATGGTG
ACTTGAAAGGGAGAGAAATTGGGGGTGGCAACCCCCAAGACATTACCTGG
GAGAACTTTGCAGAAGCAGGGAAGAATGTTGGGAAGGTCATCTGTGTACT
GAGTTACTAAGATCTGAGACAAAAGACATGCTGGACAGTGTCAAAGATGG
CAGTGGTGGTGAGAATCCAATAGTGACAAAGTTTAAGGATGTGGAATTCA
AAGCTGAGGTTTAGTGAGGACTGTTAGATGGTCCAATTTGGAATGTTAAT
AGTTTGCGGTACCTTCCCCTCTAGGAATAAGCAATATTCAAATGGGAATG
GCCCAATGCTTTTAGAAACCTTGTTTGCGTAAAAAAGGTTCATGCGTTTA
TCCCCCAAAAGGGGCCCAATTAAGAAAAGGATTTTTCCTCCTTTTTTTGG
GGATAAA
NNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACAGGAGAGAAAACTTACA
AATGCATTGAATGTAACAAATGCTTTATGCAACAATCCCTTCTTAGTAAT
CATGAGAGAATTCATACAGGAAAGAAGCCTTACAAATGTATTGAATGTGA
CAAATGCTTTACTCACCAAGTTAGTCTGAGTATTCATCAGAGAATTCATT
CAGAAAAGAAACCTTCCAAATATAGTGAGTGTGAAAAATGCTTTACCCAC
AAATTTAATCTGAGAACACATCAGACAATTCATACAGGAGAGAAACCTTA
CAAATGCAGTGAATGTGACAAATGCTTTACCCACCAAGTTAGTCTGCGTA
TTCATCAAAGAACTCATTCAGGAGAGAAACCTTACAAATGTTCTGAATGT
TACAAGTGCTTTGCTTAATAATGCAGTCTGAGAATTGATCAGAGAATTCA
TAGAGGAGAGAAACCTTACAAATATAGTGAATGTGATAAATGCTTTACCC
AAAAATACCATCTGAAAAGTCATCAGAGAATTCGTAAATGAGACAAACCT
TACGAATGTTGTATATGTGACAAATGCATTACCACAACCTCCGTGTAAGA
AATTGTCAGAGATGTTCTATTATGGAGAAAATTTAAAAGTGAAATGAATG
AGGGAAACCTTATGAAAAAATATCTTCTATAAATCTTACCAAATAGTTGT
AGGAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_l04.b1 MSMg01no377_l04.b1 CHROMAT_FILE:
MSMg01no377_l04.b1 PHD_FILE: MSMg01no377_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:58 2005
         (518 letters)



>mm_chr6_58552993_58553910
          Length = 918

 Score =  835 bits (432), Expect = 0.0
 Identities = 497/526 (94%), Gaps = 14/526 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgacattgaatttaaaatcagatgagtcattatt-ttttatgttttccccagt 63
           |||||||||||  |||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct: 195 gaattcttgaccctgaatttaaactcagatgagtcattattcttatatgttttccccagt 254

                                                                       
Query: 64  ttcatgcaggatggaaaaaaaatagagaagttagagttagtgggttttgtctagagtctg 123
           ||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 255 ttcatgcaggatgaaaaaaaaatagagaagtt--agttagtgggttttgtctagagtctg 312

                                                                       
Query: 124 cctaggtaaaagagggagtttaggtgctctcagaggtgtgaatacaacaaaagattgtgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cctaggtaaaagagggagtttaggtgctctcagaggtgtgaatacaacaaaagattgtgg 372

                                                                       
Query: 184 actttcagcaggcgtgggaacatgagaactaaagaagaccacacaggatgcagcacagtg 243
           |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 373 actttcagcaggtgtgggaacatgggaactaaagaagaccacacaggatgcagcacagtg 432

                                                                       
Query: 244 agggagtggtgtgc-----------agcttcttgaggggtctcgaggaagaattgggtta 292
           ||||||||||| ||           |||||||||||||||||| ||||||||||||||||
Sbjct: 433 agggagtggtgagcaggttcttgagagcttcttgaggggtctccaggaagaattgggtta 492

                                                                       
Query: 293 ctaatggtgacttgaaagggagagaaattgggggtggcaacccccaagacattacctggg 352
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 493 ctaatggtgacttgaaagggagagaaattggaggtggcaacccccaagacattacctggg 552

                                                                       
Query: 353 agaactttgcagaagcagggaagaatgttgggaaggtcatctgtgtactgagttactaag 412
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 553 agaactttgcagaagcagggaagagtgttgggaaggtcatctgtgtactgagttactaag 612

                                                                       
Query: 413 atctgagacaaaagacatgctggacagtgtcaaagatggcagtggtggtgagaatccaat 472
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 613 atctgagacaaaaggcatgctggacagtgtcaaagatggcagtggtggtgagactccgat 672

                                                         
Query: 473 agtgacaaagtttaaggatgtggaattcaaagctgaggtttagtga 518
           || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 agggacaaagtttaaggatgtggaattcaaagctgaggtttagtga 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)