TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTACCTCTGAGCCCCATCTTTTAATGGGGTTATTTGATTTTC
TGGAGTCCACCCTCTTAAGTTCTTTATATATATTGGATATTAGTCCTCTA
TCTGATTTAAGATAGGTAAAGGTCCTTTCCCAATCTGTTGGTGGCCTTTT
TGTCTTAATGATGGTGTCTTTTGCCTTGCAGAAACTTTGCAGTTTCATGA
GGTCTCATTTGTCAATCCTCGATCTTACAGCACAAGCCATTGCTGTTCTA
TTCAGGAATTATTCCCCTGTGCCCATATCCTCGAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCC
ACTTAGATTTGACCTTAGTACAAGAAGATAGGAATGGATCAATTCGCATT
CTTCTACAAGATAACAATCAGTTGTGCCAGCTAACCAGTACCCCAGAGCT
CTTGACTCTAGCTGCATATGTATCACAAGATGGCCTTAGCAGCCATCACT
GGAAAGAGAATGCCCATTTGGACAGGATATCTTTATTTGCCCCTCTTACC
GGGTATCGTCTTTTGCATTCTATTGGTAATGTTCGCGCTCGGCAACCACC
TTTACTTTCACCTTTTTTTCTCTCTTTTATTTCTTTCCCTCTCTTTTTTT
TTTCTCTCTTCTTCTCCTTTTTTTTTTAGCTTTCCTCTTTCTCTTATCCC
TATTCTTTTCCTTTTTTTCCTTTCTTTTCACCTTCTTCTCTTC

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTATTTAGGATCATTCAAATATTAA
AAGAATTAAAAACGTTAATCATGGAGAGCTTGCAAGAAACAGATTAATGA
CAGACTACTGTTATCATCACCCTTATCAACACCAATTAATAGTCTTAAAA
CTCTTGAAGTGTGTTCATAGGTGTCACACTTTGGTCTTTGTATTTGCATT
CATTCATTAAATGATTTAATCTTCAGTATATAGACATATCTTTGGTAAGA
CCAACTGAACAATACTTGAGAATAAGCTATCAACCCTCACCATCAAAATG
CTGGATAAAAGATGCTGAGGATGTAATACCCTGTACATTGCAGGGGTTGG
GAGAGAGAAAAAGCATGAGATTGATTTGTGCGGAATCTCTCAATCTTGCC
TTGTTTATTTTATTTTATTTTATTTTTTGCAGCTAGGCTCTTATCTTTAC
TTTTACTCTGCTCAGCTCAATCTCTTCTTGTCATTTTCCCTTTCTGTTTG
AAAATAACTGTACCCAAGTCTGCAAAGCACCGCTTTTCTATTCCATTTCT
TGTTGAAAAAAGTTTGACACTTGGTGAAAAGGACATGCTATAAAAATAAA
TAATGGGGGAATGTTTTTGATTTTAAGTAATCCAAAGCAAATATAACTGC
TTTATCCCCTTTTTCGACTATACTTATCTCCCCCTTTTTTTCACGCCTCT
CTATCATTTATTTTCTATTATTACTCCCCCCC

Query= MSMg01no377_l17.g1 MSMg01no377_l17.g1 CHROMAT_FILE:
MSMg01no377_l17.g1 PHD_FILE: MSMg01no377_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:01 2005
         (484 letters)



>mm_chr6_106238212_106239095
          Length = 884

 Score =  913 bits (472), Expect = 0.0
 Identities = 480/484 (99%), Gaps = 3/484 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatttaggatcattcaaatattaaaagaattaaaaacgttaatcatggagagcttgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tctatttaggatcattcaaatattaaaagaattaaaaacgttaatcatggagagcttgca 520

                                                                       
Query: 61  agaaacagattaatgacagactactgttatcatcacccttatcaacaccaattaatagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agaaacagattaatgacagactactgttatcatcacccttatcaacaccaattaatagtc 460

                                                                       
Query: 121 ttaaaactcttgaagtgtgttcataggtgtcacactttggtctttgtatttgcattcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttaaaactcttgaagtgtgttcataggtgtcacactttggtctttgtatttgcattcatt 400

                                                                       
Query: 181 cattaaatgatttaatcttcagtatatagacatatctttggtaagaccaactgaacaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cattaaatgatttaatcttcagtatatagacatatctttggtaagaccaactgaacaata 340

                                                                       
Query: 241 cttgagaataagctatcaaccctcaccatcaaaatgctggataaaagatgctgaggatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cttgagaataagctatcaaccctcaccatcaaaatgctggataaaagatgctgaggatgt 280

                                                                       
Query: 301 aataccctgtacattgcaggggttgggagagagaaaaagcatgagattgatttgtgcgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aataccctgtacattgcaggggttgggagagagaaaaagcatgagattgatttgtgcgga 220

                                                                       
Query: 361 atctctcaatcttgccttgtttattttattttattttattttttgcagctaggctcttat 420
           |||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||
Sbjct: 219 atctctcaatcttgccttgtttattttattttatttt---ttttgaagctaggctcttat 163

                                                                       
Query: 421 ctttacttttactctgctcagctcaatctcttcttgtcattttccctttctgtttgaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ctttacttttactctgctcagctcaatctcttcttgtcattttccctttctgtttgaaaa 103

               
Query: 481 taac 484
           ||||
Sbjct: 102 taac 99


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)