BAC Information

Click to search

BAC

Clone NameMSMg01-377M21
Chromosome6 (Build37)
Map Location 119,525,362 - 119,525,823
singlet/doubletsinglet
Overlap geneErc1
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14
Downstream geneLOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377M21.T7 (MSMg01no377_m21.b1)MSMg01-377M21.TJ (MSMg01no377_m21.g1)
ACCAG482800AG482801
length778891
length of high quality
(start - end)		462 (67 - 528)---
definitionCHROMAT_FILE: MSMg01no377_m21.b1 PHD_FILE: MSMg01no377_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:07 2005CHROMAT_FILE: MSMg01no377_m21.g1 PHD_FILE: MSMg01no377_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACTCGGTACAATAACCTGAACTCCACCTGAACCCTGCCTCTTTT
CCCTTTCAGCTTCAGAACGAGTTGGAGAAAGTTGAAGGGGACAACGCCGA
GCTGCAGGAGTTTGCCAACACCATTCTCCAGCAGATAGCCGATCACTGCC
CTGACATCCTCGAACAAGTGGTCAATGCCCTGGAAGAGTCCTCCTGATGT
GCTCCTGACAAGGAGGGTGACCAAGGAGCCAGAGAGGGAACCTGAGGAAC
AGGTGTCTGAGCCGCCACCACACCAGACTCTGCCAGCTGGATGTGCCAGT
CCGGCCGTCGGTGTCTGTCATCATACTCTGCCTTCTGCTTTGAATGTTGC
CTGCTCAAGTCTCCCTGGTGTCCATGAAGAACTGCCCTTGGCATCAGCAG
TGGAGTGCTGCGAGCTGCACTCTGCCCTTCCAGAAACAGGAAGCCAGAAG
CCACTCAGCTCATCTGGAGCCCACTCAGATTCCGTGCTCTGGGAGCTTGG
AGCTGAAGCTTTATCACGAGTGCTTTCTCCTCCGAAGGTTACAGAAGGAG
GGAGGAGATGACCCGGGTCCATAAAAAAATAGTATTCCTCTCTGGGCCCG
GCTGCCCTCTTGGTTCCTTCTGAGCCCCCCGGACAGCCCCATTTCCGCCG
CCTATTTCCCTTTTGGGTTCGGGTTACTGGCTCGGTTTTTTTCACCGATT
ATTTTTTCCCCGTGGCCCCCTGCTTTTG

CCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCGATTCCAGGNCTATAACGTGAGTCTCTGAC
TCTAAGAGAGACGGGGAGGGGGGAGGGGGNANNNNNNNNNNNNNNNNNNN
NNNNNNNNNTNNNNTNNTTTNNNNTTNTTTTTTTTTTTTTTTTTTTTNTT
TNTTTTTTTTTTTTTCCTTCTTCTCCTCCTCTCTCCCCTCTTCCCCCCCC
CTCCTTCCTTTCTCTCTTTTCCCCCCCCTTTCCTCTCTTCCCTCCCTCCT
TTCCCTTCTCCTCTCTTCTCCTCTCCCTTCTTCTTTCCTTTTCCTCTTCT
TTCCCCTCCCTTTTTTTTTTCTTTCCCCCCCCCTCCCCTCCCCTTCTTTT
TTCCTTTCCCCCCTTCTCTCCTCCTTCCCCCCCCCCTTCCCCCCCCTTTT
TTCTCTTCTTTTTTTTCTCTTCTCTCCTTCTTCCCCCCCCTCCCCCCCTC
CCCTTTTTTCTTTCCCTCTTTTCCCCCTTCTTTTTTCTCCCCTTCTCTTT
CTTTCTTCTTCCCCCCCCCTCCCCNTCTCTCTCTTTTCTCTCCTCCTCCC
TTTTTTCTCTCCTCCTTCCCCTTTTCTCCCCCCTTTTCTCCTTTCTTTTT
TCCCCTCCTTTTCTTTCCCCCCTCCTTCCTCCTCCCCCCTTTTTTTTCTT
TCCCCTCTTTCCCTCCCCCTCCTTCCTTCCTTTTCTCTTCCCCCTTTCCC
TCTTTTCTTCTCCTCTTCCTCCTTCTTCTCCTTTTTTCCTCCTCTCTTTT
TCCCCCCCTCCCTCTCCTCCTTTCTTCTCCCCCCTCTTTTTTTCTCCCTC
CTTTCTTTTTTTCCTCCTCCCCTTCCTCCCCCTTCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_m21.b1 MSMg01no377_m21.b1 CHROMAT_FILE:
MSMg01no377_m21.b1 PHD_FILE: MSMg01no377_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:07 2005
         (462 letters)



>mm_chr6_119525162_119526023
          Length = 862

 Score =  878 bits (454), Expect = 0.0
 Identities = 460/462 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataacctgaactccacctgaaccctgcctcttttccctttcagcttcagaacgagttgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ataacctgaactccacctgaaccctgcctcttttccctttcagcttcagaacgagttgga 603

                                                                       
Query: 61  gaaagttgaaggggacaacgccgagctgcaggagtttgccaacaccattctccagcagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gaaagttgaaggggacaacgccgagctgcaggagtttgccaacaccattctccagcagat 543

                                                                       
Query: 121 agccgatcactgccctgacatcctcgaacaagtggtcaatgccctggaagagtcctcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 agccgatcactgccctgacatcctcgaacaagtggtcaatgccctggaagagtcctcctg 483

                                                                       
Query: 181 atgtgctcctgacaaggagggtgaccaaggagccagagagggaacctgaggaacaggtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 atgtgctcctgacaaggagggtgaccaaggagccagagagggaacctgaggaacaggtgt 423

                                                                       
Query: 241 ctgagccgccaccacaccagactctgccagctggatgtgccagtccggccgtcggtgtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctgagccgccaccacaccagactctgccagctggatgtgccagtccggccgtcggtgtct 363

                                                                       
Query: 301 gtcatcatactctgccttctgctttgaatgttgcctgctcaagtctccctggtgtccatg 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 362 gtcatcgtactctgccttctgctttgaatgttgcctgctcaagtctccctggtctccatg 303

                                                                       
Query: 361 aagaactgcccttggcatcagcagtggagtgctgcgagctgcactctgcccttccagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aagaactgcccttggcatcagcagtggagtgctgcgagctgcactctgcccttccagaaa 243

                                                     
Query: 421 caggaagccagaagccactcagctcatctggagcccactcag 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 caggaagccagaagccactcagctcatctggagcccactcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |