Query= MSMg01no377_o04.b1 MSMg01no377_o04.b1 CHROMAT_FILE:
MSMg01no377_o04.b1 PHD_FILE: MSMg01no377_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:14 2005
(530 letters)
>mm_chr6_95430726_95431655
Length = 930
Score = 909 bits (470), Expect = 0.0
Identities = 505/526 (96%), Gaps = 16/526 (3%)
Strand = Plus / Minus
Query: 5 gaattcagtcgtcttaaccaacgtaaaatagccaggcattagtggtatccacttgtgatg 64
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 801 gaattcagtcgtcagaaccaacgtaaaatagccaggcattagtggtgtccacttgtgatg 742
Query: 65 ccaaccctggagagtggagacatttggatccctgagtccctggggttcctgctttgtgac 124
|||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 741 ccaaccctggagagtggagacatttgga--------tccctggggttcctgctttgtgac 690
Query: 125 tccaggccaatgagaggccttgtcttaacacatacacacacatacacacacatacacaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tccaggccaatgagaggccttgtcttaacacatacacacacatacacacacatacacaca 630
Query: 185 cacacacacatacatgtttgattcaaattaaagccagcccctgaataacaaccattctgt 244
||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 629 cacacac--------gtttgattccaattaaagccagcccctgaataacaaccattctgt 578
Query: 245 caagagtttagcattattgaaatttccttcctgttcctataaagtctggaagggtgagtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 caagagtttagcattattgaaatttccttcctgttcctataaagtctggaagggtgagtg 518
Query: 305 agtcagatgctgggctccacctcattatcaagtgtctagctgaagaagtcattgccatcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 agtcagatgctgggctccacctcattatcaagtgtctagctgaagaagtcattgccatcc 458
Query: 365 ttagaaaggtgcctcccagggttatccttaccaatagtgtagctgaaagtaaaacagatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttagaaaggtgcctcccagggttatccttaccaatagtgtagctgaaagtaaaacagatg 398
Query: 425 taaacgtcactttatttcctcagatgaaatggtgagatgagggctctgcccaagctgtag 484
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 taaacatcactttatttcctcagatgaaatggtgagatgagggctctgcccaagctgtag 338
Query: 485 gttaggctgtgtccagagcttttcctgctctgttctaactctccct 530
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gttaggctgtgtccagagcttttcctgctctgttctaactctccct 292
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_o04.g1 MSMg01no377_o04.g1 CHROMAT_FILE:
MSMg01no377_o04.g1 PHD_FILE: MSMg01no377_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:14 2005
(471 letters)
>mm_chr6_95245121_95245992
Length = 872
Score = 897 bits (464), Expect = 0.0
Identities = 470/472 (99%), Gaps = 1/472 (0%)
Strand = Plus / Plus
Query: 1 ctgggtttaaggaaaagagcttcaagctgtcaccttctttgttgtccctgagactagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgggtttaaggaaaagagcttcaagctgtcaccttctttgttgtccctgagactagaga 260
Query: 61 cattcccattgttctaaaattggatcgtcatacttaggttggctttaagtcatttctcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattcccattgttctaaaattggatcgtcatacttaggttggctttaagtcatttctcaa 320
Query: 121 gagttctttagttgtccatgaatttccttactgactttgtgatttattttttgggcacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagttctttagttgtccatgaatttccttactgactttgtgatttattttttgggcacaa 380
Query: 181 gatttctttatgccatctatcctcctgtctagggcattgtccttaagttacagcagattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatttctttatgccatctatcctcctgtctagggcattgtccttaagttacagcagattc 440
Query: 241 aggaaaaa-tctaacaggacaccaaattcagaacaaacctgcctagctctgtatctgtct 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggaaaaaatctaacaggacaccaaattcagaacaaacctgcctagctctgtatctgtct 500
Query: 300 gagacaaagcaaagacagtggaggattgcataatagcaccctttcaactgcagaaagctc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 gagacaaagcaaagacagtggaggattgcataatagcaccctttcaactgcagaaagatc 560
Query: 360 tcatctgtagacattcctaatgatgcagaggtcggaccctggtctagatcagggattctc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatctgtagacattcctaatgatgcagaggtcggaccctggtctagatcagggattctc 620
Query: 420 tggttttaagtgcatacagctatctggagagctcatcaagcaggtgaatggg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggttttaagtgcatacagctatctggagagctcatcaagcaggtgaatggg 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 872
Length adjustment: 10
Effective length of query: 461
Effective length of database: 862
Effective search space: 397382
Effective search space used: 397382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
