BAC Information

Click to search

BAC

Clone NameMSMg01-378C21
Chromosome6 (Build37)
Map Location 110,453,793 - 110,454,117
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378C21.T7 (MSMg01no378_c21.b1)MSMg01-378C21.TJ (MSMg01no378_c21.g1)
ACCAG483088AG483089
length776771
length of high quality
(start - end)		517 (49 - 565)539 (77 - 615)
definitionCHROMAT_FILE: MSMg01no378_c21.b1 PHD_FILE: MSMg01no378_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:36 2005CHROMAT_FILE: MSMg01no378_c21.g1 PHD_FILE: MSMg01no378_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAACTGAGGATACCAAATGGCTGAGAAGCACCTGAGAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAACCTGAGA
TTCCACCTCACACCAGTCAGAAGGGCTAAGATAAAAAATTCAGGTGACAA
CAGATAATGGCAAGGATGTGGAGAAAGAGAAACACTCCTCCACTGGTGGT
GGGATTGCAAGCTTATACAACCACTCTGAAAGTCAGTCTGGAGGTTCCTC
AGAAAATTGGACATAATGTTACTGGAAGATCCAGCAATACCTGTCCTGGG
CATATACCCAGAAGAAGTTCCAACTGGTAATAAGAACACATGCTCCACTA
TGTTCATAGCAACCCTATTTATAATAGCCAGAATCTGGAAAACACCCAGA
TGTCCCTCAACAGAAGAATGGATACAGAAAATGTGGTCATTTACACAATG
GAGTACTACTCAGCTATTAAAAAATGAATTTATGAAAGTCTTGGACAAAT
GGATGTATCTGGAGGATATCATCCTTAGTGAGGTAACCCAATCACGAAAG
AAATCATGCACTCACTGATTAGTGGATATTAGCCCCGAAACTATGACACC
CCAGATACATTTTGCTTACAAAGAAAATCCCAAGAAGGAAGACCACGGGG
GGGAAACTTCATTCCTCCCTTATAAGGGAACAAAAACCCCTTAAGGGGGA
TTTTAAACAAAGTTGGAACTTAAAAN

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGCCCATTACTGAAAGGCAGAG
ACTTGAAAATTGTGCATGCATTTTCTGTCCACTTATCACCAGCAAAATGT
GAATAAACTGATTTCCTTAAATATTCCAGAAGCATTTTCAATATTCTGCA
CACTGACTGATACATCTTTGCTACTGCAGATTTGGGGTGGTGTGGTGTAG
ATCAAGAGCCAAAATAATCTCCAACTATCATTTAGAGTAATTTATCACCC
TTTACTGTATCTGAACTCACATCATTTTGACTATCAAGTAAAGGCTTTTG
GAGTGTATCAATTTTGTAGACCTGAGATTTCCCAACCCTGTCTTAATTTA
TTTTCCTGTTGATATAATAAAATACCCATATAGCTGTGTGTGGTGGCACA
CACTTTTAAACGCAGCACTTGGGAGGCAGAGGCAGGCAAATTTTGGCCAG
CCTGATCCACAGCGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACG
CTGGGTCGGAAAATAAAATAAAACAAAATAAAATAAAATAAAATAAAATA
AAATAAAATATATAAAAATATAAAAATAATAAAATATTAAATATAAAATA
ACCCGACCAATACNACTGGGGTGTACAATTTATTTTAAGCTTAAGTTCCC
GCCTCCCCTCCTTATATTATGGGAATCTGAACGTTTGGAAAAAAAAGGTA
ACCCCTAATTTTAGTGGCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_c21.g1 MSMg01no378_c21.g1 CHROMAT_FILE:
MSMg01no378_c21.g1 PHD_FILE: MSMg01no378_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:36 2005
         (539 letters)



>mm_chr6_110453793_110454731
          Length = 939

 Score =  621 bits (321), Expect = 0.0
 Identities = 324/325 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagcccattactgaaaggcagagacttgaaaattgtgcatgcattttctgtccacttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atagcccattactgaaaggcagagacttgaaaattgtgcatgcattttctgtccacttat 266

                                                                       
Query: 61  caccagcaaaatgtgaataaactgatttccttaaatattccagaagcattttcaatattc 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 265 caccagcaaaatgtgaataaactgatttccttaaatattccagatgcattttcaatattc 206

                                                                       
Query: 121 tgcacactgactgatacatctttgctactgcagatttggggtggtgtggtgtagatcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgcacactgactgatacatctttgctactgcagatttggggtggtgtggtgtagatcaag 146

                                                                       
Query: 181 agccaaaataatctccaactatcatttagagtaatttatcaccctttactgtatctgaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 agccaaaataatctccaactatcatttagagtaatttatcaccctttactgtatctgaac 86

                                                                       
Query: 241 tcacatcattttgactatcaagtaaaggcttttggagtgtatcaattttgtagacctgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  tcacatcattttgactatcaagtaaaggcttttggagtgtatcaattttgtagacctgag 26

                                    
Query: 301 atttcccaaccctgtcttaatttat 325
           |||||||||||||||||||||||||
Sbjct: 25  atttcccaaccctgtcttaatttat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |