Query= MSMg01no379_f06.b1 MSMg01no379_f06.b1 CHROMAT_FILE:
MSMg01no379_f06.b1 PHD_FILE: MSMg01no379_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:04 2005
(503 letters)
>mm_chr6_66009116_66010019
Length = 904
Score = 922 bits (477), Expect = 0.0
Identities = 495/501 (98%), Gaps = 1/501 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagttcttgccagcaccaggatctgcacattgggtcaaacaagttgaaactgaa 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagttcttggcagcaccaggatctgcacattgggtcaaacaagttgaaactgaa 263
Query: 64 aaaccgtgcatgggtgtgaaaagtttacaagtgagcatgtggttttgagaaaggggtggc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaccgtgcatgggtgtgaaaagtttacaagtgagcatgtggttttgagaaaggggtggc 323
Query: 124 ttgcaaacttatgttcaaaatatttatttgttactgccataaagcacctccaagaaaaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgcaaacttatgttcaaaatatttatttgttactgccataaagcacctccaagaaaaca 383
Query: 184 gttcatagaatttaaaattccctcagagaacttggcagctcttgggcccatctgaaatgt 243
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 384 gttcatagaatttaaaattccctcggagaacttggcagctcttgggcccatctgaaatgt 443
Query: 244 tgggttccattgtctgccccagccacacagagctagcagagccctgggtcacctctgccc 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cgggttccattgtctgccccagccacacagagctagcagagccctgggtcacctctgccc 503
Query: 304 actgctaggattgcacagtgttttctttccaacttatttttt-agggttttcaatcctaa 362
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 504 actgctaggattgcacagtgttttctttccagcttatttttttagggttttcaatcctaa 563
Query: 363 aactggcatctgagaaaagaagaaaagccagaattaaaagcatggctctatactgggaaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aactggcatctgagaaaagaagaaaagccagaattaaaagcatggctctatactgggaaa 623
Query: 423 gtccaatgttctgaatgtgtaaattgtaacccacccacaaaacttacgaccccaaattta 482
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtccaatattctgaatgtgtaaattgtaacccacccacaaaacttacgaccccaaattta 683
Query: 483 tcttgtctaccagaaatgcag 503
|||||||||||||||||||||
Sbjct: 684 tcttgtctaccagaaatgcag 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 904
Length adjustment: 10
Effective length of query: 493
Effective length of database: 894
Effective search space: 440742
Effective search space used: 440742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_f06.g1 MSMg01no379_f06.g1 CHROMAT_FILE:
MSMg01no379_f06.g1 PHD_FILE: MSMg01no379_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:04 2005
(433 letters)
>mm_chr6_66150189_66151017
Length = 829
Score = 810 bits (419), Expect = 0.0
Identities = 428/433 (98%), Gaps = 4/433 (0%)
Strand = Plus / Minus
Query: 1 agatcacacgattgctgtgatgttaagtggaatagtttactcacagcatgtcttgtagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agatcacacgattgctgtgatgttaagtggaatagtttactcacagcatgtcttgtagca 570
Query: 61 tggaacatattctagaatatcatcatcattattctttggacttggttctcaggacagttg 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tggaacatactctagaatatcatcatcattattctttggacttggttctcaggacagttg 510
Query: 121 cctccctcctagccttcagactctcctgaggcaggcagcactctgttcgtctattcacac 180
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 509 cctccctcctagccttcagactctcctgaggcaggcagcactct----gtctattcacac 454
Query: 181 agagtgagttaaacaaggtctggcacacatcaggggtccattcatctttatcagtgagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 agagtgagttaaacaaggtctggcacacatcaggggtccattcatctttatcagtgagta 394
Query: 241 gatagctgtggagtgatgcattctgtgggaataccctatttatggccttggctctcatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gatagctgtggagtgatgcattctgtgggaataccctatttatggccttggctctcatgc 334
Query: 301 agactggggatataggtgacagtgggcattatctggatttctgccttaaactttggtgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agactggggatataggtgacagtgggcattatctggatttctgccttaaactttggtgtt 274
Query: 361 tagaatcgcagagggaattgcgaggatttttttctgtgacgtcctttgcctgccgacaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tagaatcgcagagggaattgcgaggatttttttctgtgacgtcctttgcctgccgacaga 214
Query: 421 tgttaccagagca 433
|||||||||||||
Sbjct: 213 tgttaccagagca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 829
Length adjustment: 9
Effective length of query: 424
Effective length of database: 820
Effective search space: 347680
Effective search space used: 347680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
