Query= MSMg01no379_m13.b1 MSMg01no379_m13.b1 CHROMAT_FILE:
MSMg01no379_m13.b1 PHD_FILE: MSMg01no379_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:38 2005
(578 letters)
>mm_chr6_68217647_68218625
Length = 979
Score = 514 bits (266), Expect = e-150
Identities = 299/310 (96%), Gaps = 2/310 (0%)
Strand = Plus / Minus
Query: 270 ttgacatacttacctttagctttttcaactcaaaaattggaattacacaacagctttttt 329
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 609 ttgacatacttacctttagctttttcaactcaaaaattggaattacacaacagccttttt 550
Query: 330 attccagtattttgtgactgatcttgtcataaaattttgacaaaagtgttttgcttttga 389
||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 549 attgcagtattttgtgactgatcatgtcataaaattttgacaaaagtaatttgcttttga 490
Query: 390 g-aaaataggtaagttttggaaataatcaatatttataaaatattatttaagatcaggtt 448
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 489 gaaaaataggtaagttttggaaataatcaatatttataaaatattatttaa-atcaggct 431
Query: 449 gtaggcaaacctgtaggatatttccattcttagtggttaatgctgaagtgcttagtccat 508
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 430 gtaggcaaacctgtaggatattttcattcttagtggttaatgctgaagtgcttagtccat 371
Query: 509 tatttctgccatttctgggttggtggtccagggttctataagaagcactatgtctcctaa 568
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 370 tatttctgccatttctgggttggtggtccagggttctataagaagcagtctgtctcctaa 311
Query: 569 ttcaaaaaca 578
||||||||||
Sbjct: 310 ttcaaaaaca 301
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 979
Length adjustment: 10
Effective length of query: 568
Effective length of database: 969
Effective search space: 550392
Effective search space used: 550392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_m13.g1 MSMg01no379_m13.g1 CHROMAT_FILE:
MSMg01no379_m13.g1 PHD_FILE: MSMg01no379_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:38 2005
(437 letters)
>mm_chr6_67971749_67972587
Length = 839
Score = 772 bits (399), Expect = 0.0
Identities = 429/441 (97%), Gaps = 6/441 (1%)
Strand = Plus / Plus
Query: 1 ctctt-ctgtcctggacctccttatttactaatgtcttatataagtcagcagaagccaaa 59
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttcctgtcctggacctccttatttactaatgtcttatataagtcagcagaagccaaa 260
Query: 60 ggaaaaagatacatccctaaataaattttaaaaagtatatatactctcctaaaaaggaga 119
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 gtaaaaagatacatccctaaataaattttaaaaagaatatatactctcctaaaaaggaga 320
Query: 120 atattagtcttaagttataattttttttgctagaaatgaaaaagaattcttgattggaat 179
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 atattagtcttaagttataa--ttttttgctagaaattaaaaagaattcttgattggaat 378
Query: 180 caatgttgagtttcttc---taaataaacataactaatgaaaccagttaaataaatcaga 236
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caattttgagtttcttctcttaaataaacataactaatgaaaccagttaaataaatcaga 438
Query: 237 gaaagtttataatattaaaacgttacccatgtcacctgtttgatagtgatcaagcagcaa 296
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gaaagtttaaaatattaaaacgttacccatgtcacctgtttgatagtgatcaagcagcaa 498
Query: 297 aacataagaaatgtaaattttataaaaatctgaacaagaaatgctccacagttttgtctg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aacataagaaatgtaaattttataaaaatctgaacaagaaatgctccacagttttgtctg 558
Query: 357 ctgtgctgcactttttgtcatctgcagaagtatgtctacaaagaaggagccaaagttcta 416
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 559 ctgtgctgcactttttgtcatctgcagaagtatgtctacaaggaaggagccaaagttcta 618
Query: 417 agcatgtgcctatttagaggt 437
|||||||||||||||||||||
Sbjct: 619 agcatgtgcctatttagaggt 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 839
Length adjustment: 9
Effective length of query: 428
Effective length of database: 830
Effective search space: 355240
Effective search space used: 355240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
