BAC Information

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BAC

Clone NameMSMg01-379P15
Chromosome6 (Build37)
Map Location 97,390,665 - 97,391,099
singlet/doubletsinglet
Overlap geneFrmd4b
Upstream geneC630007B19Rik, C130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3
Downstream geneLOC641241, LOC100043692, Mitf, Gm765, LOC666019
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379P15.T7 (MSMg01no379_p15.b1)MSMg01-379P15.TJ (MSMg01no379_p15.g1)
ACCAG484461AG484462
length7591,036
length of high quality
(start - end)		444 (70 - 513)---
definitionCHROMAT_FILE: MSMg01no379_p15.b1 PHD_FILE: MSMg01no379_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:53 2005CHROMAT_FILE: MSMg01no379_p15.g1 PHD_FILE: MSMg01no379_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACCTTTTCCACTACAATCCCAGGTCCACAAAATAAAAATTTCAAA
GCAACAGGCAAAGGAAGCATTGAGTGACTTGTACTGTGGAACAGGGTAAA
ATCTCAGACCAGGAGCCGGAGATAGAAATAGGGTTCATTCATTCATTCAT
TCATTCACTCATTCATTCATTCATCTGTTTATCTTGCATGTTTTCTGGTA
CCTACAGTAAGCTGGGTACCATTTAAAGAGCTCAAAACAAAAAGCCAGTG
AATGAGAGACAGTCTTTCCCTATAGAACTTGTATAAATGACAGACCATTT
GACGTGGAAGTGGGCTTTCCCAGGTCAGAAGCTTAGCAGCGAGCCTACCC
ACAGATGCAGCTAAGACACATCTGTGCTGTTGCAATGGCCTGTGTTTACC
AAGCTCTGTGCCCAGCACAAAGCCACCCTGACAGCAAGTGTAACTATCAC
CGTTTGAAAGTTTTTTTGTTTTTTTTTTTAAATCCTTCAAAAGTTGAATT
TTANTAAGCTGTGGCTTGGACGGGGCTGTGTACTTCTTAGTTTTCTGGGA
ATTAATTGTTATCTCACGGGACATCCTTAAGGAACCCGGGGGTTTCGCCG
CCCTTATGGATGGTCTTAAAGTACGGTCAACACGTGTTTTTAAAGGGCAT
ATTTGGGCCCGGTGGAGGCCGGCCCCGCCGTTTTCTCTATCCGTTGGACC
CGTGCCTTN

CTTTGTGATGGCTTGGAAGAGAGGNCGACAGAGAGGCAGGGTGCGTGCTG
TGGTGGTTTTATGTGGCGGTGCGGTCGTTCGGGGATGGTTATAAGTAAAG
TAGATGCGTGGAGAAGAAGACCGTGATAATAGCAATGAAAAATTTGAATT
AGCTATTAGATCCATCTTGCCGCGTTGTCTGGCGAGGACCGCACGAGCTC
TGGCGCTGGCCTGAGGTGCGTCTGCGCTTACCGCCAGCCAGCTACACCGC
AACGCCCTAAGGGTACTCTCATATTTGCCTTTTTACATCCTATATGCACT
ATAGACAACGCGGCAATTAATAAAAAAAAAGTGAGGGACGGAGACGGAGA
GGGGATCTACTGTAGGGTAGGCGAGGTTGGACAAGGTAGAGTGCGTGAGG
GGTTGCGTAGAACGCGCGGAGAGTTAACTGTGTATTTTCTGCCATCTAAC
AGACTGANTAGTATTTGCGTAAGTTAACGGATCGAGGATTGAGACGGAAT
TCTACGGCGCGTATGCGAGTTGGGTCTGTGTATTTGCTGAATTGTGACCA
GCGGCTGTGGTCCGGATATGTTTAGGACGACGGGAGGATCGAGTTTATGT
CGGCTAAGTAGATGCAGCATACGTTTCGTATGCGGAGTCATGGTCGCTAC
GATGCAGAGAGGCGCGCGTGTTGATTGTTACGCGTCGGCGCAGCGTCGCG
TATGAAGCGTAATCCAGCTCAATATGTTGAGTAGTGCGTGTGGCTCAGTA
TACGCAGCGCGGCGGTAACGGAGATTCGAGGGAGAGCGGGCTGCGGATGA
GGGTGCGGAGAATGTATCGTAATGTTCAATTTCTGCAGATTGATGCATCA
CTGATAGATTGACTCAGCAGGCTGGAGTGTGTACGAGGCTATGCTATTAC
CGCCCATTCCGAAGCCATAGTCCCGTGGCATGCACTTATTAGTATTATAG
GCACGACGTATGTGCTATCGTCGGGCCTGCACAGGGCTTGGCGTTTCCTA
GCCCTTATTCCCACTTGCTTGCGAGTAGTTAAATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_p15.b1 MSMg01no379_p15.b1 CHROMAT_FILE:
MSMg01no379_p15.b1 PHD_FILE: MSMg01no379_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:53 2005
         (444 letters)



>mm_chr6_97390308_97391151
          Length = 844

 Score =  706 bits (365), Expect = 0.0
 Identities = 421/445 (94%), Gaps = 14/445 (3%)
 Strand = Plus / Minus

                                                                       
Query: 3   tcccaggtccac--aaaataaaaatttcaaagcaacaggcaaaggaagcattgagtgact 60
           ||||||||||||  |||| ||||| ||||||| ||||||||||||||||| |||||||||
Sbjct: 792 tcccaggtccacaaaaaaaaaaaaattcaaaggaacaggcaaaggaagcaatgagtgact 733

                                                                       
Query: 61  tgtactgtggaacagggtaaaatctcagaccaggagccggagatagaaatagggttcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 732 tgtactgtggaacagggtaaaatctcagaccaggagccggagatagaaataggg------ 679

                                                                       
Query: 121 cattcattcattcattcactcattcattcattcatctgtttatcttgcatgttttctggt 180
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 678 --ttcattcattcattcactcattcattcattcatccgtttatcttgcatgttttctggt 621

                                                                       
Query: 181 acctacagtaagctgggtaccatttaaa-gagctcaaaacaaaaagccagtgaatgagag 239
           ||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 620 acctacagtgagctgggtaccatttaaagga-ctcaaaacaaaaagccagtgaatgagag 562

                                                                       
Query: 240 acagtctttccctatagaacttgtataaatgacagaccatttgacgtggaagtgggcttt 299
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagtctttccctatagaaattgtataaatgacagaccatttgacgtggaagtgggcttt 502

                                                                       
Query: 300 ccc-aggtcagaagcttagcagcgagcctacccacagatgcagctaagacacatctgtgc 358
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 cccga-gtcagaagcttagcagcgagcctacccacagatgcagctaagacacatctgcgc 443

                                                                       
Query: 359 tgttgcaatggcctgtgtttaccaagctctgtgcccagcacaaagccaccctgacagcaa 418
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgttgcgatggcctgtgtttaccaagctctgtgcccagcacaaagccaccctgacagcaa 383

                                    
Query: 419 gtgtaactatcaccgtttgaaagtt 443
           |||| ||||||||||||||||||||
Sbjct: 382 gtgtgactatcaccgtttgaaagtt 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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