Query= MSMg01no380_c16.b1 MSMg01no380_c16.b1 CHROMAT_FILE:
MSMg01no380_c16.b1 PHD_FILE: MSMg01no380_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:09 2005
(688 letters)
>mm_chr6_40396507_40397592
Length = 1086
Score = 1122 bits (580), Expect = 0.0
Identities = 646/669 (96%), Gaps = 2/669 (0%)
Strand = Plus / Minus
Query: 20 attttaagaaaaaataaaaagagcctatgaaattttcagataaaaacatgggaaatttca 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 attttaagaaaaaataaaaagagcctatgaaattttcagataaaaacatgggaaatttca 827
Query: 80 tatcatggcagatgtcagccaatggaatttgtaatctcctcttgtgatatagtggaagtt 139
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 826 tatcatgggagatgtcagccaatgggatttgtaatctcctcttgtgatatagtggaagat 767
Query: 140 actgttgttatccgttatgaaaaaaagctttgcttggaagtacagcagactaaaaagcag 199
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 actgttaatatccattatgaaaaaaagctttgcttggaagtacagcagactaaaaagcag 707
Query: 200 tagaaaggagtatagatgaataactagtgaaaactctggatggatgactaagggagatgt 259
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 706 tagaaaggagtgtagatgaatacctagtgaaaactctggatggatgactaagggagatgt 647
Query: 260 gggggcagctccttgacttctgaagatagtgagaaggcagccccctatcaagatggagtt 319
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 646 gggggcagctccttgacttctgaagatagtgagaaggcagcctcctatcaagatggagtt 587
Query: 320 atattatttggaatttgctaactcagaggtcaaataagtgttggaatctagaatctataa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 atattatttggaatttgctaactcagaggtcaaataagtgttggaatctagaatctataa 527
Query: 380 tgttgcaatagagtcacagctagcgtttaatgcagttagctgtagcaaccttactactgt 439
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 526 tgttgcaatagagtcatagctagcgtttaatgcagttagctgtagcaaacttactactgc 467
Query: 440 ctaaagatgtttttttctagtattcagtgattctgctaagaatcccttatggggaaggag 499
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 466 ctaaagatgttttt--ctagtattcagtgattctgctaagaatcccttatggagaaggag 409
Query: 500 gttcgtgccacgcaagttttgcttgcacctcttggaaaaagctgaaagaagccaactttc 559
||| |||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 408 gtttgtgccacgcactttttgcttgcatctcttggaaaaagctaaaagaagccaactttc 349
Query: 560 ctttcctgtgcatcagcagcaatgtcttcagcaaagctccactagctgccaccttgatct 619
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 348 ctttcctgtgcatcagcagcaatgtcttcagcaaagctccactagctgccaccctgatct 289
Query: 620 gtcaccatgatctgctctcatcctggttcanatgtatcattgtggagtagggatttttcc 679
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 288 gtcaccatgatctgctctcatcctggttcatatgtaacattgtggagtagggatttttcc 229
Query: 680 ctgttgtat 688
|||||||||
Sbjct: 228 ctgttgtat 220
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1086
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1076
Effective search space: 729528
Effective search space used: 729528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_c16.g1 MSMg01no380_c16.g1 CHROMAT_FILE:
MSMg01no380_c16.g1 PHD_FILE: MSMg01no380_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:09 2005
(646 letters)
>mm_chr6_40246904_40247944
Length = 1041
Score = 1164 bits (602), Expect = 0.0
Identities = 630/646 (97%), Gaps = 12/646 (1%)
Strand = Plus / Plus
Query: 1 tcttgtggcaataatggaaaattaattcaactaaattcttagaagttggatcactatgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgtggcaataatggaaaattaattcaactaaattcttagaagttggatcactatgta 260
Query: 61 gatacaggtttatcttgtgtagatggtgttaactttctaccactgtgacaaaagacctaa 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gatacaggtttatcttgtgtagatggtgttaaccttctaccactgtgacaaaagacctaa 320
Query: 121 gataatcagcttaacagaacgaagctttacttaggcttttagtttcaaaggactcaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gataatcagcttaacagaacgaagctttacttaggcttttagtttcaaaggactcaatct 380
Query: 181 gtggtcacttgacacctgttgaactcttgagtggatgccagtcaccactgaggtaactaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggtcacttgacacctgttgaactcttgagtggatgccagtcaccactgaggtaactaa 440
Query: 241 gatgaaaccacagttagtagtttgagcttgaagttctaacccctatcttccagaagggag 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgaaacaacagttagtagtttgagcttgaagttctaacccctatcttccagaagggag 500
Query: 301 agagctaggtattgggttaacaaccaatcatccccatattatgatgtcaccacaaaagac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagctaggtattgggttaacaaccaatcatccccatattatgatgtcaccacaaaagac 560
Query: 361 cctggaaaatagagtcctggcaacatgtggttagtgagcccatctgcgtgtcagggttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctggaaaatagagtcctggcaacatgtggttagtgagcccatctgcgtgtcagggttgg 620
Query: 421 gggtgggtgatgcactagattccacagcaacacaagctcccaggctaggcttgaagcccc 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 gggtgggtgatgcactagattccacagcaacacaagctcccaggct-----tgaagcccc 675
Query: 481 tcctagcctcacgcctctgtgtatcttcttctggctcttcatggataccagtggttctca 540
||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 676 tcctaacctcacgcctctgt-------cttctggctcttcatggataccagtggttctca 728
Query: 541 accttcataatgctgcaaccctttaatgcagttcctcatgttgtcgtgacctcaaaccat 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 729 accttcataatgctgcaaccctttaatgcagttcctcatgttgtcgtgacttcaaaccat 788
Query: 601 acaattatttggttgctatttcaaaactctaattttgatactttca 646
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 acaattatttggttgctatttcaaaactctaattttgatactttca 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1041
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1031
Effective search space: 655716
Effective search space used: 655716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
