Query= MSMg01no380_d20.b1 MSMg01no380_d20.b1 CHROMAT_FILE:
MSMg01no380_d20.b1 PHD_FILE: MSMg01no380_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:15 2005
(525 letters)
>mm_chr6_29501220_29502144
Length = 925
Score = 977 bits (505), Expect = 0.0
Identities = 517/521 (99%)
Strand = Plus / Minus
Query: 5 gaattccttgattggcttgccaaaagagaccacagtgggagctgtcacagtgacacataa 64
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gaattccttgaaaggtttgccaaaagagaccacagtgggagctgtcacagtgacacataa 666
Query: 65 acaacttacagatttccacaagcaagtcactaggtgagtgatcctggggccttgtgaata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 acaacttacagatttccacaagcaagtcactaggtgagtgatcctggggccttgtgaata 606
Query: 125 gaagacagtggctgtgttatgtagaaaacgtgtctgcttagatttgaattccctcagttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gaagacagtggctgtgttatgtagaaaacgtgtctgcttagatttgaattccctcagttg 546
Query: 185 gcatagagtgtcaatggatagcaacatcaccatgctctgtgtatgcacgtgcgcatgctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gcatagagtgtcaatggatagcaacatcaccatgctctgtgtatgcacgtgcgcatgctt 486
Query: 245 tgtggtttccacatagtattcatggcaataactttctttttagtataaaatgaagtttgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgtggtttccacatagtattcatggcaataactttctttttagtataaaatgaagtttgt 426
Query: 305 tttggggcttaagaagggagtagaggcagagatagagggggcacagagaaggacagagag 364
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 425 tttggggcttaagaagggagtagaggcagagatagagggggtacagagaaggacagagag 366
Query: 365 acggggaacatcatggcagtatcttcctttgtagtttataactgttagcctttctctggt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 acggggaacatcatggcagtatcttcctttgtagtttataactgttagcctttctctggt 306
Query: 425 aggtagaacctttaaaatcttggctaaatgttaagcacaggcttctactctttcatttta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aggtagaacctttaaaatcttggctaaatgttaagcacaggcttctactctttcatttta 246
Query: 485 ctgtatgtgtagtatgtgcaggtggcgcagtgtatgtgtgg 525
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctgtatgtgtagtatgtgcaggtggcgcagtgtatgtgtgg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_d20.g1 MSMg01no380_d20.g1 CHROMAT_FILE:
MSMg01no380_d20.g1 PHD_FILE: MSMg01no380_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:15 2005
(581 letters)
>mm_chr6_29357054_29358034
Length = 981
Score = 980 bits (507), Expect = 0.0
Identities = 546/581 (93%), Gaps = 34/581 (5%)
Strand = Plus / Plus
Query: 1 tccaagtgggcttcggactggcttcttttgttttgttagtctaaaactatactaaaatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccaagtgggcttcggactggcttcttttgttttgttagtctaaaactatactaaaatca 260
Query: 61 aaggtttatttaagcaggagatcttataaaaggctatttcaaggattaaatgaaggtcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggtttatttaagcaggagatcttataaaaggctatttcaaggattaaatgaaggtcaa 320
Query: 121 aaccatcaagtcttcatacacagttctcattacagtttcttacttcccactgtaatcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccatcaagtcttcatacacagttctcattacagtttcttacttcccactgtaatcttc 380
Query: 181 aggaatctgagagtatttatttatttatttacttatttatttatttatttatttatttat 240
|||||||||||||||||||||||||||||||
Sbjct: 381 aggaatctgagagtatttatttatttattta----------------------------- 411
Query: 241 ttatttatttatttatttaagacaggtgtccctacatagccctggctgtcctagaatttg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 -----tatttatttatttaagacaggtgtccctacatagccctggctgtcctagaatttg 466
Query: 301 ttatgtagaccaggctggccttaaactcacagaggtctctgcctctgcctcccaaatgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ttatgtagaccaggctggccttaaactcacagaggtctctgcctctgcctcccaaatgct 526
Query: 361 gtgatttaagcttgtgccaccatgcctggacctgtctaagaacttgtggttggattaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gtgatttaagcttgtgccaccatgcctggacctgtctaagaacttgtggttggattaaag 586
Query: 421 aagaaacattaaaactggagttcaggggtgttgaatcctcttacaagtaaaataccgtat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aagaaacattaaaactggagttcaggggtgttgaatcctcttacaagtaaaataccgtat 646
Query: 481 attgtaattaaggccagtttgtgcatcttacatgttagtagaactagtgttctaagtgct 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 647 attgtaattaaggccagtttgtgcatcttaaatgttagtagaactagtgttctaagtgct 706
Query: 541 gtgattctttgtctgtgaatgagtgtgtgctgtatgtgtgt 581
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gtgattctttgtctgtgaatgagtgtgtgctgtatgtgtgt 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
