BAC Information

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BAC

Clone NameMSMg01-380F05
Chromosome6 (Build37)
Map Location 98,907,854 - 98,908,286
singlet/doubletsinglet
Overlap geneFoxp1
Upstream geneMitf, Gm765, LOC666019, LOC665963, LOC665979
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380F05.T7 (MSMg01no380_f05.b1)MSMg01-380F05.TJ (MSMg01no380_f05.g1)
ACCAG484728AG484729
length766785
length of high quality
(start - end)
496 (31 - 526)433 (64 - 496)
definitionCHROMAT_FILE: MSMg01no380_f05.b1 PHD_FILE: MSMg01no380_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:22 2005CHROMAT_FILE: MSMg01no380_f05.g1 PHD_FILE: MSMg01no380_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCGCTATACGACTCACTATTTCCAGAGGATCCGCGGAATTCTTTGTTC
ATCTCTGAGCCCCAAATTTTAATGGGGTTATTTGATTTTCGGGAGTCCAC
CTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAG
GATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTG
ACAGTGTCTTTTGCCTTGCAGAAGCTTTGCAACTTTATGAGGTCCCATTT
ATCGATTCATGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATT
TTTCCCCTGTACCCATATCTTTGAGGCTTTCCCCTACTTTCTCCTCTATA
TGTTTCAGTGTTTCTGGTTTTATGTGGAGTTCCTTAATCCACTTATATTT
GACCTTAGTACAAGGAGATAGGAATGGATCAATTCTCATTCTTCTACATG
ATAACAGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTT
CACTGGATGGTTTTAGCTCCCTTGTCATAGATCAAGTGACCATAGGTGTG
TGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGT
CTCTATACCCGTACCATGCAGTTTTTATCCACATTGCCCCGTATTATAAC
TTTTAGCCACGGCCGGTGATTCCCCCCGAGGGTCCTTTTATCTTTGAAAT
AAAGTTTTCGTTTCCCCATGGCTTTTTTGGCACTCCCCATTTTACTTGCC
CAATTATCTCTTCTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGAAAGAACACGAATGGCGGTGGAGTGGATGGATGCA
GAGTTACTGTTCGGTCACTGACCAGGTTGGTGGAGGAGTTGTGGTCCTTC
TTTCCAGAGACTCCTGTTTAGGCTATGTGGATTTTACTTCTGAGCCCTTG
TTCCTTTTCGCTTTGGTCACGTGCAGCTCGGGGAGCAGTGTAACTGTGTA
CCTTCTGCCACAGTCAGACACAGACAGTCCGACTGTTGGGTCACCGTACG
TAAAAGCTGGCTTTGGAAGTGAGATAGTCTCTGGTGAAGTCCACTCGAGA
ACGGCGTCACCCAGTCTCCCTTGCATTCACTTGGGCTGTTGTGGCCCTCA
CACAAACCCAGGCTTCCTGTTTGCTGTCTTGAGAGGTTGGTTAGCAGGCT
CCTTGGGAACATCTCAGTCCCACCAGCTCCTCAGGTGAGGTGCCTGCTGT
CACTGCCTATCCCAACTCCTTTATCAGAGTGTTGCCTTTAATCAGGGTGA
AGAGCGATATATGGAAGATTCTCCCCGCCCCTCTCTTCCGGTACGGTATC
CAGGGTTTTTTGTAAATCCCGAATGTCTGGTATAATGTCCCCCTCTATTG
CTCGCTATTTTGCAGGTTTTTTATCTCTTCCTCTTGTTCTTCTCCCTGGT
TTTCTTGGTCTCCAAACGGTTGTTTTTTTCCTTTTGGCCTCCTCATCTTC
CCCCTTTCTTACTTTACTTTCCCGTGGTCTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_f05.g1 MSMg01no380_f05.g1 CHROMAT_FILE:
MSMg01no380_f05.g1 PHD_FILE: MSMg01no380_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:22 2005
         (433 letters)



>mm_chr6_98907654_98908486
          Length = 833

 Score =  822 bits (425), Expect = 0.0
 Identities = 431/433 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaagaacacgaatggcggtggagtggatggatgcagagttactgttcggtcactgacc 60
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 agaaagaacgcaaatggcggtggagtggatggatgcagagttactgttcggtcactgacc 574

                                                                       
Query: 61  aggttggtggaggagttgtggtccttctttccagagactcctgtttaggctatgtggatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aggttggtggaggagttgtggtccttctttccagagactcctgtttaggctatgtggatt 514

                                                                       
Query: 121 ttacttctgagcccttgttccttttcgctttggtcacgtgcagctcggggagcagtgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttacttctgagcccttgttccttttcgctttggtcacgtgcagctcggggagcagtgtaa 454

                                                                       
Query: 181 ctgtgtaccttctgccacagtcagacacagacagtccgactgttgggtcaccgtacgtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ctgtgtaccttctgccacagtcagacacagacagtccgactgttgggtcaccgtacgtaa 394

                                                                       
Query: 241 aagctggctttggaagtgagatagtctctggtgaagtccactcgagaacggcgtcaccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aagctggctttggaagtgagatagtctctggtgaagtccactcgagaacggcgtcaccca 334

                                                                       
Query: 301 gtctcccttgcattcacttgggctgttgtggccctcacacaaacccaggcttcctgtttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtctcccttgcattcacttgggctgttgtggccctcacacaaacccaggcttcctgtttg 274

                                                                       
Query: 361 ctgtcttgagaggttggttagcaggctccttgggaacatctcagtcccaccagctcctca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctgtcttgagaggttggttagcaggctccttgggaacatctcagtcccaccagctcctca 214

                        
Query: 421 ggtgaggtgcctg 433
           |||||||||||||
Sbjct: 213 ggtgaggtgcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)